Browse Element(s) Details


Os.29290.1.S1_at

Description gb:AK110423.1
DB_XREF= gi:32995632
TID=Os.29290.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489A01.10 (P0489A01.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-A08, full insert sequence.
FL= gb:AK110423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0878010/11inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08750OsAffx.10972.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.25107.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.2.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08750OsAffx.10972.1.S1_at11/111+4370952..4390222expressed protein
LOC_Os01g08750Os.505.1.S1_x_at11/111+4370952..4390222expressed protein
LOC_Os01g08760OsAffx.10973.2.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_s_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.1.S1_x_at11/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08760OsAffx.10973.2.S1_at10/111+4391956..4393960Choline/ethanolamine kinase family protein, expressed
LOC_Os01g08770Os.17792.1.S1_at11/111+4394454..4398744WD-repeat protein 46, putative, expressed
LOC_Os01g08780Os.29290.1.S1_at10/111+4399470..4404094inositol-1,4,5-trisphosphate 5-Phosphatase, putative, expressed
LOC_Os01g08790OsAffx.23165.1.S1_x_at11/111+4412218..4412934Histone-like transcription factor and archaeal histone family protein
LOC_Os01g08800OsAffx.21912.1.S1_at11/111+4414085..4415729Cytochrome P450 family protein, expressed
LOC_Os01g08810Os.28952.1.S1_at11/111+4418120..4419907Cytochrome P450 family protein, expressed
LOC_Os01g08820OsAffx.23166.1.S1_at11/111+4428540..4430481PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29290.1.S1_at--988--5931Chr01:4401172..4401196 (25 bp)
GAGCACACGAGCTGATTTCGACGAT
LOC_Os01g08780
Os.29290.1.S1_at--882--5771Chr01:4401153..4401177 (25 bp)
GACGATGGATTGGACTCAGCTGGCA
LOC_Os01g08780
Os.29290.1.S1_at--293--2551Chr01:4400693..4400717 (25 bp)
AACTCGGCCAAGTACATCGGCGACG
LOC_Os01g08780
Os.29290.1.S1_at--205--5891Chr01:4399783..4399807 (25 bp)
GAGCTGACGATGTCGGACCACCGGC
LOC_Os01g08780
Os.29290.1.S1_at--485--6471NONE
GATAACTTGTGGTTGTAGCGCTCCA
NONE
Os.29290.1.S1_at--442--6971Chr01:4399583..4399607 (25 bp)
GTAGCGCTCCATGTGTAAACACTGT
LOC_Os01g08780
Os.29290.1.S1_at--316--1971Chr01:4399563..4399587 (25 bp)
ACTGTAATCGGCTAATCGCCCATGG
LOC_Os01g08780
Os.29290.1.S1_at--87--4551Chr01:4399546..4399570 (25 bp)
GCCCATGGCCGTGAAGGATTCTCTT
LOC_Os01g08780
Os.29290.1.S1_at--756--10571Chr01:4399519..4399543 (25 bp)
TTCTCAAGCTCACAATCCACTGGTG
LOC_Os01g08780
Os.29290.1.S1_at--25--3031Chr01:4399506..4399530 (25 bp)
AATCCACTGGTGCATTTGCCATTTT
LOC_Os01g08780
Os.29290.1.S1_at--513--10691Chr01:4399491..4399515 (25 bp)
TTGCCATTTTGCTTCATACTGAGTA
LOC_Os01g08780
Target Sequence 
GAGCACACGAGCTGATTTCGACGATGGATTGGACTCAGCTGGCAGAGAAAGATCAGCTGAAGCGAGAGCTAAGGAAGGGT
CGGGCGTTCGACGGGTGGACGGAAGGGGTGCTGGAGTTCGCGCCGACGTACAAGTACGAGCTCAACTCGGCCAAGTACAT
CGGCGACGACCAGCGCGGCGGCAGGAGAACGCCGGCGTGGTGTGATAGGATACTGTCGTTCGGGAAGGGGGTGAAGCTGA
TGAGCTACGGGAGGGCGGAGCTGACGATGTCGGACCACCGGCCGGTGGTGGCGACGTACGCGGCGGAGGTGGAGGTGTTC
AGCAGCAGGAAGCTGCAGAGGGCGCTGACGCTCACGGACGCCGAGGTGGAGGCCGGCACCGTCGTCGCCGTGCCGGACCA
CCTCGCCGGTTTTTGAGGGCGAGAGAGGATCGGTTTCTGCAAGGATAACTTGTGGTTGTAGCGCTCCATGTGTAAACACT
GTAATCGGCTAATCGCCCATGGCCGTGAAGGATTCTCTTCCTTCTCAAGCTCACAATCCACTGGTGCATTTGCCATTTTG
CTTCATACTGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis