Browse Element(s) Details


Os.31773.2.S1_x_at

Description gb:NM_186338.1
DB_XREF= gi:34899761
GEN=OJ1773_H01.4
TID=Os.31773.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31773 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cell differentiation protein (OJ1773_H01.4), mRNA.
PROD=putative cell differentiation protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5234010/11Cell differentiation protein rcd1, putative, expressed
LOC_Os07g3779010/11Cell differentiation protein rcd1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52290Os.4898.1.S1_at11/114+30854574..30857262pentatricopeptide, putative, expressed
LOC_Os04g52300Os.9807.1.S1_at11/114+30857445..30858798expressed protein
LOC_Os04g52310Os.18572.1.S1_at11/114+30859134..30861473ZIP zinc/iron transport family protein, expressed
LOC_Os04g52320Os.47317.1.S1_at11/114+30870200..30873541expressed protein
LOC_Os04g52330Os.17679.1.S1_at11/114+30876737..30878634expressed protein
LOC_Os04g52340Os.31773.2.S1_x_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52340Os.31773.2.S1_at10/114+30879851..30883952Cell differentiation protein rcd1, putative, expressed
LOC_Os04g52354Os.12042.1.S1_at11/114+30884213..3088884240S ribosomal protein S11, putative, expressed
LOC_Os04g52370Os.6313.1.S1_at11/114+30889854..30894370UDP-N-acetylglucosamine pyrophosphorylase, putative, expressed
LOC_Os04g52380Os.5641.1.S1_a_at11/114+30900345..30905085Methyl-CpG binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31773.2.S1_x_at--315--2332Chr07:22659752..22660047 (25 bp)
AAAGTTGGAGCACCTCATATTCCCC
LOC_Os07g37790
Os.31773.2.S1_x_at--358--2772Chr07:22660085..22660109 (25 bp)
AAGACCTTTTGAATACCTGCGACTC
LOC_Os07g37790
Os.31773.2.S1_x_at--896--8712Chr07:22660121..22660144 (24 bp)
TGTCATCGGTGCACTTGTTAAGGTT
LOC_Os07g37790
Os.31773.2.S1_x_at--713--352Chr07:22660775..22660799 (25 bp)
ATAATTCCTCTGTGTTTGCGTACCA
LOC_Os07g37790
Os.31773.2.S1_x_at--768--5891NONE
GAGCTGTCAAAAACTGTGGCCACCT
NONE
Os.31773.2.S1_x_at--866--7552Chr07:22661428..22661452 (25 bp)
GTGGCCACCTTCATTGTTCAGAAGA
LOC_Os07g37790
Os.31773.2.S1_x_at--426--7932Chr07:22661470..22661494 (25 bp)
GGATTGCGCTACATTTGTGCCACTG
LOC_Os07g37790
Os.31773.2.S1_x_at--1063--4732Chr07:22661494..22661518 (25 bp)
GCTGAGCGTTTCTTTGCTGTAGGCA
LOC_Os07g37790
Os.31773.2.S1_x_at--1056--8572Chr07:22661534..22661558 (25 bp)
TGGTAGTTTCACTTGCTGAGCAGCC
LOC_Os07g37790
Os.31773.2.S1_x_at--766--10312Chr07:22661582..22661606 (25 bp)
TTATCCGATGTTACCTTAGGCTGTC
LOC_Os07g37790
Os.31773.2.S1_x_at--79--3172Chr07:22661202..22661720 (25 bp)
AATTCCAGGGCATGTGCTGCACTAC
LOC_Os07g37790
Target Sequence 
AAAGTTGGAGCACCTCATATTCCCCTGTACCTGTACCCATTCTTGAATACTACCAGCAAGACAAGACCTTTTGAATACCT
GCGACTCACCAGCCTGGGTGTCATCGGTGCACTTGTTAAGGTTGATGATACTGAAGTTATCAGTTTTCTGCTGCAAACTG
AAATAATTCCTCTGTGTTTGCGTACCATGGAAATGGGAAGTGAGCTGTCAAAAACTGTGGCCACCTTCATTGTTCAGAAG
ATTCTCCTCGATGATGTTGGATTGCGCTACATTTGTGCCACTGCTGAGCGTTTCTTTGCTGTAGGCAGTGTTTTAGCAAA
CATGGTAGTTTCACTTGCTGAGCAGCCTTCCACAAGGTTGCTGAAGCACATTATCCGATGTTACCTTAGGCTGTCAGACA
ATTCCAGGGCATGTGCTGCACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31773.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis