Browse Element(s) Details


Os.32172.1.S1_at

Description gb:AK105712.1
DB_XREF= gi:32990921
TID=Os.32172.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0690B02.11 (P0690B02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E11, full insert sequence.
FL= gb:AK105712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5229011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed
LOC_Os01g52350OsAffx.2311.1.S1_at11/111+30409693..30410557hypothetical protein
LOC_Os01g52360OsAffx.23763.1.S1_at11/111+30410839..30412329NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32172.1.S1_at--217--1271Chr01:30387404..30387428 (25 bp)
AGATCCCCAGGGTGACGTTCCAGGA
LOC_Os01g52290
Os.32172.1.S1_at--87--8871Chr01:30387512..30387536 (25 bp)
TGATGAGCTGCTCGCTGGACACGCC
LOC_Os01g52290
Os.32172.1.S1_at--536--7251Chr01:30387542..30387566 (25 bp)
GTCCGCACCGTGTCCTTGATAGGAA
LOC_Os01g52290
Os.32172.1.S1_at--551--2671Chr01:30387568..30387592 (25 bp)
AAGCGTCTTAGGCAGCTGGTTACAT
LOC_Os01g52290
Os.32172.1.S1_at--463--2691Chr01:30387599..30387623 (25 bp)
AAGCTGATCATCTCGTTTCATCTTG
LOC_Os01g52290
Os.32172.1.S1_at--345--3511Chr01:30387625..30387649 (25 bp)
CATGGTGTATGTAGATCCGATCCTC
LOC_Os01g52290
Os.32172.1.S1_at--831--4691Chr01:30387654..30387678 (25 bp)
GCGGCTGTGCGCGAAATTGTACATT
LOC_Os01g52290
Os.32172.1.S1_at--611--51Chr01:30387676..30387700 (25 bp)
ATTGCATTAAGTTGTGGTCCCACGT
LOC_Os01g52290
Os.32172.1.S1_at--66--4471Chr01:30387727..30387751 (25 bp)
GCCTCCCAATGCAACCTGTGGATTG
LOC_Os01g52290
Os.32172.1.S1_at--299--2391Chr01:30387752..30387776 (25 bp)
AAACTGTGGCGCCAACAACGAAGTT
LOC_Os01g52290
Os.32172.1.S1_at--228--2832Chr01:30387772..30387796 (25 bp)
AAGTTGCGCCAAATAGCATCCTGCC
LOC_Os01g52290
Target Sequence 
AGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCCGGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACG
TCGCAGATACCCCCTTGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTTGATAG
GAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCATCTTGTCATGGTGTATGTAGATCCG
ATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATTGCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCC
TCCGCCTCCCAATGCAACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis