Browse Element(s) Details


Os.32212.1.A1_at

Description gb:AK105570.1
DB_XREF= gi:32990779
TID=Os.32212.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.13 (P0419B01.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C12, full insert sequence.
FL= gb:AK105570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1013011/11RNA-dependent RNA polymerase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein
LOC_Os01g10110Os.43596.1.S1_at11/111+5267274..5272324Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g10120Os.47130.4.A1_x_at4/111+5277984..5278307retrotransposon protein, putative, unclassified
LOC_Os01g10130Os.32212.2.S1_x_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.32212.1.A1_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.5217.1.S1_at1/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10140Os.2202.3.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10140Os.2202.2.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016246biological_processRNA interference
GO:0016441biological_processposttranscriptional gene silencing
GO:0030422biological_processRNA interference, production of siRNA
GO:0003676molecular_functionnucleic acid binding
GO:0003968molecular_functionRNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32212.1.A1_at--1024--411Chr01:5285231..5285255 (25 bp)
ATCATCGCAGGTAGAGTGTCGTGTT
LOC_Os01g10130
Os.32212.1.A1_at--942--7451Chr01:5285216..5285240 (25 bp)
GTGTCGTGTTTATGGACTACTACCA
LOC_Os01g10130
Os.32212.1.A1_at--33--8131Chr01:5285203..5285227 (25 bp)
GGACTACTACCACCAAATTAACTAT
LOC_Os01g10130
Os.32212.1.A1_at--175--8071Chr01:5285138..5285162 (25 bp)
GGAGCAGACTTTTTAAGCTGGTGAT
LOC_Os01g10130
Os.32212.1.A1_at--836--1611Chr01:5285123..5285147 (25 bp)
AGCTGGTGATTTAGCACTTCTCATG
LOC_Os01g10130
Os.32212.1.A1_at--730--5112Chr04:25394596..25394675 (25 bp)
GCACTTCTCATGAACATGTGGGACA
NONE
Os.32212.1.A1_at--254--3951Chr01:5285046..5285070 (25 bp)
CGGCATGGCTGCTTCAAGTGAACCT
LOC_Os01g10130
Os.32212.1.A1_at--21--1111Chr01:5285030..5285054 (25 bp)
AGTGAACCTGCTGTAGTGAACTAGT
LOC_Os01g10130
Os.32212.1.A1_at--1038--5471Chr01:5285013..5285037 (25 bp)
GAACTAGTGATTATCTGTAAGCGCA
LOC_Os01g10130
Os.32212.1.A1_at--903--9791Chr01:5284996..5285020 (25 bp)
TAAGCGCAGTGTCCAGTGTGACAAT
LOC_Os01g10130
Os.32212.1.A1_at--56--811Chr01:5284973..5284997 (25 bp)
ATGGGCACAAGTATGCATCACTGTT
LOC_Os01g10130
Target Sequence 
ATCATCGCAGGTAGAGTGTCGTGTTTATGGACTACTACCACCAAATTAACTATCTATTGTATCAAGTATGTGTGTACTGT
AGCAGTAATGTTAGGAGCAGACTTTTTAAGCTGGTGATTTAGCACTTCTCATGAACATGTGGGACAAAGTACTACTAGAA
AAATTATTANGGGCCATGTTTATNCCGGCATGGCTGCTTCAAGTGAACCTGCTGTAGTGAACTAGTGATTATCTGTAAGC
GCAGTGTCCAGTGTGACAATGGGCACAAGTATGCATCACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32212.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis