Browse Element(s) Details


Os.32212.2.S1_x_at

Description gb:NM_188258.1
DB_XREF= gi:34903599
GEN=P0419B01.13
TID=Os.32212.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.13 (P0419B01.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0419B01.13 (P0419B01.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1013011/11RNA-dependent RNA polymerase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein
LOC_Os01g10110Os.43596.1.S1_at11/111+5267274..5272324Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g10120Os.47130.4.A1_x_at4/111+5277984..5278307retrotransposon protein, putative, unclassified
LOC_Os01g10130Os.32212.2.S1_x_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.32212.1.A1_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.5217.1.S1_at1/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10140Os.2202.3.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed
LOC_Os01g10140Os.2202.2.S1_x_at11/111+5304217..5321280RNA dependent RNA polymerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016246biological_processRNA interference
GO:0016441biological_processposttranscriptional gene silencing
GO:0030422biological_processRNA interference, production of siRNA
GO:0003676molecular_functionnucleic acid binding
GO:0003968molecular_functionRNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32212.2.S1_x_at--921--3531Chr01:5286797..5286821 (25 bp)
CTTCATGGGCCGCAGTTTTTCGTAC
LOC_Os01g10130
Os.32212.2.S1_x_at--626--10351Chr01:5286782..5286806 (25 bp)
TTTTTCGTACCATTCATCATCCATA
LOC_Os01g10130
Os.32212.2.S1_x_at--1083--3051Chr01:5286723..5286747 (25 bp)
AATCTCTGCGATCTTGTAATGTTCA
LOC_Os01g10130
Os.32212.2.S1_x_at--62--7871Chr01:5285884..5285908 (25 bp)
GGTATCATTGCTCCCATGTTTCATG
LOC_Os01g10130
Os.32212.2.S1_x_at--766--8231Chr01:5285825..5285849 (25 bp)
GGCAACACCGCTACGAGGAGTACTT
LOC_Os01g10130
Os.32212.2.S1_x_at--746--7031Chr01:5285792..5285816 (25 bp)
GTACAATGCTCTATCGCGCAATGGT
LOC_Os01g10130
Os.32212.2.S1_x_at--312--91Chr01:5285449..5285473 (25 bp)
ATTCGAGCAGACACAGAGGGACCCC
LOC_Os01g10130
Os.32212.2.S1_x_at--45--5791Chr01:5285424..5285448 (25 bp)
GACGACGTGTTCTCGGAAGCCTGCG
LOC_Os01g10130
Os.32212.2.S1_x_at--1109--5411Chr01:5285409..5285433 (25 bp)
GAAGCCTGCGTGATCTACCAGATTG
LOC_Os01g10130
Os.32212.2.S1_x_at--1071--2331Chr01:5285376..5285400 (25 bp)
AAAGCACGGTGGAGCAACGACGCCA
LOC_Os01g10130
Os.32212.2.S1_x_at--850--2031Chr01:5285306..5285330 (25 bp)
ACTTCTACGCGCTCAAGAACGAGGG
LOC_Os01g10130
Target Sequence 
CTTCATGGGCCGCAGTTTTTCGTACCATTCATCATCCATACTTGGACAAATCTATGATAAAGCAGAAGATGTAGAATCTC
TGCGATCTTGTAATGTTCAACCAATCGGGGTATCATTGCTCCCATGTTTCATGGAAAGAGAAGCACCTCCAGCAGCCAGG
CACCTCTGGCAACACCGCTACGAGGAGTACTTGACTGACAGTACAATGCTCTATCGCGCAATGGTAGATAAAGAAGAAAG
GAACATGAAGTTCCAAGAACTCTACGAGAAGTACAAGCATATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGG
ACCCCGACGACGTGTTCTCGGAAGCCTGCGTGATCTACCAGATTGTGTATGAGAAAGCACGGTGGAGCAACGACGCCAGC
AGGTGTGGCTTCGCCTGGAAGGTCGCCGGCCGCGCGCTGTGCCACTTCTACGCGCTCAAGAACGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32212.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis