Browse Element(s) Details


Os.32739.1.S1_at

Description gb:AK103077.1
DB_XREF= gi:32988286
TID=Os.32739.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinesin (P0504D03.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118E11, full insert sequence.
FL= gb:AK103077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3304011/11kinesin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed
LOC_Os01g33050Os.2120.1.S1_a_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.2.S1_x_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.1.S1_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33060Os.45981.1.S1_at11/111+18490755..18500776HEAT repeat family protein, expressed
LOC_Os01g33070NANA1+18503381..18504722pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0007112biological_processmale meiosis cytokinesis
GO:0010245biological_processradial microtubular system formation
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32739.1.S1_at--892--3851Chr01:18484175..18484199 (25 bp)
CTGAGCTTCTGGGTTGGTCAAGGCC
LOC_Os01g33040
Os.32739.1.S1_at--1080--7271Chr01:18484233..18484257 (25 bp)
GTGCCAACATGCTTCAGTCTGTGTA
LOC_Os01g33040
Os.32739.1.S1_at--412--6951Chr01:18484255..18484279 (25 bp)
GTAGAATCTTCTCTTGAACCTGTAT
LOC_Os01g33040
Os.32739.1.S1_at--1026--5431Chr01:18484270..18484294 (25 bp)
GAACCTGTATTCTTCTTTCATCACC
LOC_Os01g33040
Os.32739.1.S1_at--591--2331Chr01:18484386..18484410 (25 bp)
AAAGTTCGTCTTGCCATGTGGTTAA
LOC_Os01g33040
Os.32739.1.S1_at--872--231Chr01:18484440..18484464 (25 bp)
ATATTTCCACTCTTTCTCACAGGAA
LOC_Os01g33040
Os.32739.1.S1_at--739--1211Chr01:18484472..18484496 (25 bp)
AGTTCAGGAACCAGGATCTCGCGGA
LOC_Os01g33040
Os.32739.1.S1_at--618--10411Chr01:18484541..18484565 (25 bp)
TTTTGGCTTGTGCTATTTGTTCCGC
LOC_Os01g33040
Os.32739.1.S1_at--68--3691Chr01:18484565..18484589 (25 bp)
CTTTCTGGATTGTTCTAGCGTCTTT
LOC_Os01g33040
Os.32739.1.S1_at--606--9991Chr01:18484580..18484604 (25 bp)
TAGCGTCTTTCTAGTTCCAGATTCT
LOC_Os01g33040
Os.32739.1.S1_at--384--1211Chr01:18484646..18484670 (25 bp)
AGTTTTGTTAGTCAACCTCGTCTGC
LOC_Os01g33040
Target Sequence 
CTGAGCTTCTGGGTTGGTCAAGGCCAGGATTGACAGGGGGTGAATTGATGCAAGCATGGTGCCAACATGCTTCAGTCTGT
GTAGAATCTTCTCTTGAACCTGTATTCTTCTTTCATCACCAGTGTAGAGAGACTTGGATGTTCTCATATTCTTTATTAAG
TAGTGTTAAGAAATGATTCCGTTCCAAATTTTGCCCCCAAATTGATGATCAAAAGTTCGTCTTGCCATGTGGTTAAAGGC
TGAATCATTTAAAGAATGCATAGAGATATTTCCACTCTTTCTCACAGGAACACATGGAGTTCAGGAACCAGGATCTCGCG
GAGTTAGAAAATATTGTGGTTCTCGCTGTACAACGAGGACCTCTCCTTTTGGCTTGTGCTATTTGTTCCGCTTTCTGGAT
TGTTCTAGCGTCTTTCTAGTTCCAGATTCTTCTTTCTTGGCGAGTAACTTCTCGTCAGACATCTTCCTTTTAGTTTTGTT
AGTCAACCTCGTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis