Browse Element(s) Details


Os.32889.2.S1_at

Description gb:AK072846.1
DB_XREF= gi:32982869
TID=Os.32889.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU097601(C53578)~unknown protein (P0022B05.46), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143D15, full insert sequence.
FL= gb:AK072846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g308241/11Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os05g399801/11expressed protein
LOC_Os09g292391/11purine permease, putative, expressed
LOC_Os09g368801/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30790NANA12+18456342..18459454Terpene synthase, N-terminal domain containing protein
LOC_Os12g30800NANA12+18463981..18466167Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os12g30810OsAffx.31950.1.S1_at11/1112+18479824..18480471hypothetical protein
LOC_Os12g30824Os.53402.1.S1_at11/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824Os.32889.2.S1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824OsAffx.9141.2.A1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30840OsAffx.7746.1.S1_at8/1112+18502869..18503601hypothetical protein
LOC_Os12g30840OsAffx.26126.1.S1_at2/1112+18502869..18503601hypothetical protein
LOC_Os12g30850NANA12+18508128..18509277Zinc knuckle family protein
LOC_Os12g30860NANA12+18511855..18512230NA
LOC_Os12g30870NANA12+18516518..18516786NA
LOC_Os12g30880NANA12+18517539..18520520hypothetical protein
LOC_Os12g30890NANA12+18523843..18525192retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006863biological_processpurine transport
GO:0009611biological_processresponse to wounding
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0010184biological_processcytokinin transport
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0019953biological_processsexual reproduction
GO:0005576cellular_componentextracellular region
GO:0005887cellular_componentintegral to plasma membrane
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0005345molecular_functionpurine transporter activity
GO:0008415molecular_functionacyltransferase activity
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
GO:0015211molecular_functionpurine nucleoside transporter activity
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32889.2.S1_at--190--3211Chr07:1152965..1152989 (25 bp)
CAAGCCCTGAATGAGTAACGTTTTT
NONE
Os.32889.2.S1_at--148--10751Chr07:1152988..1153012 (25 bp)
TTGCAACGACATGACCTTGAGCTGG
NONE
Os.32889.2.S1_at--77--5871Chr07:1153014..1153038 (25 bp)
GAGCCAAGCAGCTGTGATCTCTGAA
NONE
Os.32889.2.S1_at--747--8651Chr07:1153049..1153073 (25 bp)
TGTGGGTTCAGGGTAGTCCTATCCT
NONE
Os.32889.2.S1_at--745--6931Chr07:1153061..1153085 (25 bp)
GTAGTCCTATCCTGATGCAATTCTC
NONE
Os.32889.2.S1_at--1114--8551Chr07:1153096..1153120 (25 bp)
TGGATTCAGGCCCTATTTGGCTTTT
NONE
Os.32889.2.S1_at--1023--108525Chr12:5669550..5669569 (20 bp)
TTGGCTTTTTCTCGAACGCGCAAAA
NONE
Os.32889.2.S1_at--665--91Chr07:1153170..1153194 (25 bp)
ATTCGATACACAACGCATTAAGCCA
NONE
Os.32889.2.S1_at--119--104912Chr12:1577454..1577788 (25 bp)
TTAAGCCAGACCGACTTATGCCAAG
NONE
Os.32889.2.S1_at--985--10251Chr07:1153459..1153483 (25 bp)
TTTGTCTGAATTTTGCATGCCTCAC
NONE
Os.32889.2.S1_at--344--4451Chr07:1153477..1153501 (25 bp)
GCCTCACCCTGTTTCCTTTTAGTAT
NONE
Target Sequence 
CAAGCCCTGAATGAGTAACGTTTTTGCAACGACATGACCTTGAGCTGGAGAGCCAAGCAGCTGTGATCTCTGAATTTCTA
GAGTTGTGGGTTCAGGGTAGTCCTATCCTGATGCAATTCTCAGTGGTGGACTGGATTCAGGCCCTATTTGGCTTTTTCTC
GAACGCGCAAAAGGATTGCACGTTAATATATTAGAAGATAAGAATATTCGATACACAACGCATTAAGCCAGACCGACTTA
TGCCAAGAGAGGAGGGAGGCCCTACTTGGTGGAGATTCTGAAAAGAGCAATTCTACGGTCCTTAAGGAGGTACCATGAGG
TACCAAAATTTTAGTGTAAAATTTGGTACATCATAGTACCTAGATACCAAGAGGTACCAAATTTATAATAGAAAAAATGG
TACCTCATAGTACCTACTCAAGAACCATAAAATTGCTCTGGTATGTAAATATGAGCTCAACATGGTGTTGAAGCTTTGAT
GTGTAATCGGTCATTTTGTCTGAATTTTGCATGCCTCACCCTGTTTCCTTTTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32889.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis