Browse Element(s) Details


OsAffx.7746.1.S1_at

Description tigr:9640.m02982
TID=OsAffx.7746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g308408/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30810OsAffx.31950.1.S1_at11/1112+18479824..18480471hypothetical protein
LOC_Os12g30824Os.53402.1.S1_at11/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824Os.32889.2.S1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824OsAffx.9141.2.A1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30840OsAffx.7746.1.S1_at8/1112+18502869..18503601hypothetical protein
LOC_Os12g30840OsAffx.26126.1.S1_at2/1112+18502869..18503601hypothetical protein
LOC_Os12g30850NANA12+18508128..18509277Zinc knuckle family protein
LOC_Os12g30860NANA12+18511855..18512230NA
LOC_Os12g30870NANA12+18516518..18516786NA
LOC_Os12g30880NANA12+18517539..18520520hypothetical protein
LOC_Os12g30890NANA12+18523843..18525192retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7746.1.S1_at--125--9631Chr12:18503636..18503660 (25 bp)
TCAGACTATCTAAGGAGGAAGGAAG
NONE
OsAffx.7746.1.S1_at--513--7011Chr12:18503603..18503627 (25 bp)
TGACGAAAAACTATCGAATCCTTAC
NONE
OsAffx.7746.1.S1_at--88--2971Chr12:18503578..18503602 (25 bp)
AATGGCAAGTAAATCCACCGGACTG
NONE
OsAffx.7746.1.S1_at--217--8231Chr12:18503575..18503599 (25 bp)
GGCAAGTAAATCCACCGGACTGTCA
LOC_Os12g30840
OsAffx.7746.1.S1_at--992--9831Chr12:18503569..18503593 (25 bp)
TAAATCCACCGGACTGTCAACTTGG
LOC_Os12g30840
OsAffx.7746.1.S1_at--75--1771Chr12:18503562..18503586 (25 bp)
ACCGGACTGTCAACTTGGCGGGAGT
LOC_Os12g30840
OsAffx.7746.1.S1_at--342--5731Chr12:18503558..18503582 (25 bp)
GACTGTCAACTTGGCGGGAGTGTCC
LOC_Os12g30840
OsAffx.7746.1.S1_at--509--271Chr12:18502941..18502965 (25 bp)
ATATGTGCTTTTACTTCATGGATCA
LOC_Os12g30840
OsAffx.7746.1.S1_at--849--771Chr12:18502939..18502963 (25 bp)
ATGTGCTTTTACTTCATGGATCAAC
LOC_Os12g30840
OsAffx.7746.1.S1_at--509--6451Chr12:18502921..18502945 (25 bp)
GATCAACATGGTCAGCCCGATGTAG
LOC_Os12g30840
OsAffx.7746.1.S1_at--1033--3491Chr12:18502915..18502939 (25 bp)
CATGGTCAGCCCGATGTAGGAAGGC
LOC_Os12g30840
Target Sequence 
TCAGACTATCTAAGGAGGAAGGAAGAGAACGAATGACGAAAAACTATCGAATCCTTACAATGGCAAGTAAATCCACCGGA
CTGTCAACTTGGCGGGAGTGTCCAGAGTGTAGGTGTGGAGACCGTTGCCAGGTGATAAGGGGAATCCAAGGATATGTGCT
TTTACTTCATGGATCAACATGGTCAGCCCGATGTAGGAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis