Browse Element(s) Details


OsAffx.31950.1.S1_at

Description tigr:9640.m02979
TID=OsAffx.31950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3081011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30790NANA12+18456342..18459454Terpene synthase, N-terminal domain containing protein
LOC_Os12g30800NANA12+18463981..18466167Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os12g30810OsAffx.31950.1.S1_at11/1112+18479824..18480471hypothetical protein
LOC_Os12g30824Os.53402.1.S1_at11/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824Os.32889.2.S1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30824OsAffx.9141.2.A1_at1/1112+18481279..18500136Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os12g30840OsAffx.7746.1.S1_at8/1112+18502869..18503601hypothetical protein
LOC_Os12g30840OsAffx.26126.1.S1_at2/1112+18502869..18503601hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31950.1.S1_at--1030--6051Chr12:18480086..18480110 (25 bp)
GAGTTGTCGACGGACCCTTGTCGCA
LOC_Os12g30810
OsAffx.31950.1.S1_at--117--5751Chr12:18480078..18480102 (25 bp)
GACGGACCCTTGTCGCAGGATCAGG
LOC_Os12g30810
OsAffx.31950.1.S1_at--892--9311Chr12:18480020..18480044 (25 bp)
TCCCTCCTATCATCGTTGTCAGTGA
LOC_Os12g30810
OsAffx.31950.1.S1_at--368--10811Chr12:18480005..18480029 (25 bp)
TTGTCAGTGACGTTTGGTCTCTGGC
LOC_Os12g30810
OsAffx.31950.1.S1_at--42--1891Chr12:18479996..18480020 (25 bp)
ACGTTTGGTCTCTGGCTTCAGAACA
LOC_Os12g30810
OsAffx.31950.1.S1_at--402--3631Chr12:18479981..18480005 (25 bp)
CTTCAGAACAAATAGGTAGGCCCAT
LOC_Os12g30810
OsAffx.31950.1.S1_at--703--7851Chr12:18479967..18479991 (25 bp)
GGTAGGCCCATGATCTATACTACAT
LOC_Os12g30810
OsAffx.31950.1.S1_at--201--7731Chr12:18479928..18479952 (25 bp)
GGTGGTGGACGTGACTCTACTACCA
LOC_Os12g30810
OsAffx.31950.1.S1_at--696--7371Chr12:18479918..18479942 (25 bp)
GTGACTCTACTACCACTATTGGCAG
LOC_Os12g30810
OsAffx.31950.1.S1_at--4--3331Chr12:18479905..18479929 (25 bp)
CACTATTGGCAGACAATGGGCTCCA
LOC_Os12g30810
OsAffx.31950.1.S1_at--995--791Chr12:18479890..18479914 (25 bp)
ATGGGCTCCATTAGTCAGGATCCCC
LOC_Os12g30810
Target Sequence 
GAGTTGTCGACGGACCCTTGTCGCAGGATCAGGGGCCATGGTCCATCCACCCTAGCTCTGTCCACGTCCCTCCTATCATC
GTTGTCAGTGACGTTTGGTCTCTGGCTTCAGAACAAATAGGTAGGCCCATGATCTATACTACATTAAAAGATGAAAGTGG
TGGTGGACGTGACTCTACTACCACTATTGGCAGACAATGGGCTCCATTAGTCAGGATCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis