Browse Element(s) Details


Os.32955.1.A1_at

Description gb:AK102266.1
DB_XREF= gi:32987475
TID=Os.32955.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chaperone-like ATPase (OSJNBb0063G05.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088N13, full insert sequence.
FL= gb:AK102266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4780011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47770Os.10221.1.S1_at11/111+27663108..27666183Nuclear movement protein, expressed
LOC_Os01g47780Os.5908.1.S1_at11/111+27667758..27668798Fasciclin domain containing protein, expressed
LOC_Os01g47790Os.35344.3.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790Os.35344.18.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_at7/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_x_at5/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47800Os.32955.2.S1_x_at11/111+27684185..27690000expressed protein
LOC_Os01g47800Os.32955.1.A1_at11/111+27684185..27690000expressed protein
LOC_Os01g47810NANA1+27693165..27695552S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47820OsAffx.2268.1.S1_at11/111+27702153..27704572S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47830NANA1+27707419..27709605retrotransposon protein, putative, unclassified
LOC_Os01g47840Os.48003.1.A1_at11/111+27713419..27715764S-locus-like receptor protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32955.1.A1_at--978--4831Chr01:27689577..27689601 (25 bp)
GCTAAGGATACCACAGTTCTGATCT
LOC_Os01g47800
Os.32955.1.A1_at--404--1231Chr01:27689591..27689615 (25 bp)
AGTTCTGATCTTTTTCCTGTGCTGG
LOC_Os01g47800
Os.32955.1.A1_at--165--9651Chr01:27689623..27689647 (25 bp)
TCAGTGTTTACCAGGTCTTGTGCAC
LOC_Os01g47800
Os.32955.1.A1_at--1086--9571Chr01:27689638..27689662 (25 bp)
TCTTGTGCACTCTCATGGGATTTTG
LOC_Os01g47800
Os.32955.1.A1_at--401--811Chr01:27689652..27689676 (25 bp)
ATGGGATTTTGCTTGTTTCCCCAGT
LOC_Os01g47800
Os.32955.1.A1_at--1071--10291Chr01:27689667..27689691 (25 bp)
TTTCCCCAGTGGTAGCAGCTAGTTC
LOC_Os01g47800
Os.32955.1.A1_at--381--10051Chr01:27689686..27689710 (25 bp)
TAGTTCATTGCAATTACACCTCCTC
LOC_Os01g47800
Os.32955.1.A1_at--902--9311Chr01:27689723..27689747 (25 bp)
TCCCAAGCTAGCCTTCTGCAAATAA
LOC_Os01g47800
Os.32955.1.A1_at--476--6791Chr01:27689794..27689818 (25 bp)
GTTTTTGGGAAACCTGGATCGACTG
LOC_Os01g47800
Os.32955.1.A1_at--1009--10831Chr01:27689841..27689865 (25 bp)
TTGTGTCTGTTAAGTGGTTCCGTTG
LOC_Os01g47800
Os.32955.1.A1_at--311--7891Chr01:27689856..27689880 (25 bp)
GGTTCCGTTGTATACGCAGTCTACT
LOC_Os01g47800
Target Sequence 
GCTAAGGATACCACAGTTCTGATCTTTTTCCTGTGCTGGCCTATCTTCAGTGTTTACCAGGTCTTGTGCACTCTCATGGG
ATTTTGCTTGTTTCCCCAGTGGTAGCAGCTAGTTCATTGCAATTACACCTCCTCCCTTGATGCAACTCCCAAGCTAGCCT
TCTGCAAATAAATTGCCTTTATTGGTTATGTTCAGCAGTGGAGTGCTGGGTTATATAGTTTTTGGGAAACCTGGATCGAC
TGAANAGAAACAATGCTATTGATTTTGTGTCTGTTAAGTGGTTCCGTTGTATACGCAGTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32955.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis