Browse Element(s) Details


OsAffx.2268.1.S1_at

Description tigr:9629.m04595
TID=OsAffx.2268.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4782011/11S-locus-like receptor protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47790Os.35344.3.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790Os.35344.18.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_at7/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_x_at5/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47800Os.32955.2.S1_x_at11/111+27684185..27690000expressed protein
LOC_Os01g47800Os.32955.1.A1_at11/111+27684185..27690000expressed protein
LOC_Os01g47810NANA1+27693165..27695552S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47820OsAffx.2268.1.S1_at11/111+27702153..27704572S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47830NANA1+27707419..27709605retrotransposon protein, putative, unclassified
LOC_Os01g47840Os.48003.1.A1_at11/111+27713419..27715764S-locus-like receptor protein kinase, putative
LOC_Os01g47850OsAffx.1674.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47850OsAffx.2022.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.3.S1_x_at2/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_x_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.1.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47870Os.49936.2.A1_at3/111+27727574..27729593hypothetical protein
LOC_Os01g47870Os.33601.3.S1_x_at1/111+27727574..27729593hypothetical protein
LOC_Os01g47870OsAffx.15708.1.S1_at1/111+27727574..27729593hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2268.1.S1_at--981--5551Chr01:27702728..27702752 (25 bp)
GAAAGCCTGCTAAGTTGGAGCCAAA
LOC_Os01g47820
OsAffx.2268.1.S1_at--85--2911Chr01:27702705..27702729 (25 bp)
AAGGTACAGGATTGCCCTGGGCACA
LOC_Os01g47820
OsAffx.2268.1.S1_at--761--4111Chr01:27702654..27702678 (25 bp)
CGAATGCCTTGAGTGGGTCGTGCAT
LOC_Os01g47820
OsAffx.2268.1.S1_at--1070--3331Chr01:27702540..27702564 (25 bp)
CAGCACTAGTTTCAATTTCACCCAT
LOC_Os01g47820
OsAffx.2268.1.S1_at--419--8371Chr01:27702480..27702504 (25 bp)
GGCGTTGAATTTGCCGATCAATGCA
LOC_Os01g47820
OsAffx.2268.1.S1_at--280--3491Chr01:27702409..27702433 (25 bp)
CAGGAATCAGGGTTTCAAGCGGCAT
LOC_Os01g47820
OsAffx.2268.1.S1_at--550--10191Chr01:27702359..27702383 (25 bp)
TTTCCAGAGTTTGTCCAGGAGGCCA
LOC_Os01g47820
OsAffx.2268.1.S1_at--482--3491Chr01:27702326..27702350 (25 bp)
CAGGCTACAGGGAATGTCACCGATT
LOC_Os01g47820
OsAffx.2268.1.S1_at--373--5651Chr01:27702293..27702317 (25 bp)
GACAGACTGCATGGACACTTTGATC
LOC_Os01g47820
OsAffx.2268.1.S1_at--780--8611Chr01:27702250..27702274 (25 bp)
TGGTGAAGGTAGCTCTTTCATGCCT
LOC_Os01g47820
OsAffx.2268.1.S1_at--1012--10591Chr01:27702190..27702214 (25 bp)
TTCTGAAGGCTCTCATGTTATGTGA
LOC_Os01g47820
Target Sequence 
GAAAGCCTGCTAAGTTGGAGCCAAAGGTACAGGATTGCCCTGGGCACAGCCAGGGGTCTTGCTTATCTTCATCACGAATG
CCTTGAGTGGGTCGTGCATTGTGATGTGAAACCAGAAAACATACTTCTAAGTAGAGATTTCGATGCCAAGATAGCAGACT
TTGGACTAGCCAAACTTGCAAAGCGAGACAGCACTAGTTTCAATTTCACCCATATGAGGGGCACAATGGGCTACATGGCA
CCAGAATGGGCGTTGAATTTGCCGATCAATGCAAAGGTTGATGTCTACAGCTATGGAGTAGTGCTCCTTGAGATTGTGAC
AGGAATCAGGGTTTCAAGCGGCATAGTGGTAGATGAAAGGCAAGTGGAGTTTCCAGAGTTTGTCCAGGAGGCCAAAAAGA
TTCAGGCTACAGGGAATGTCACCGATTTAGTGGATGACAGACTGCATGGACACTTTGATCCAGAGCAAGTAATTACAATG
GTGAAGGTAGCTCTTTCATGCCTGGAAGAAAGAAGCAAGAGGCCAACAATGGATGAAATTCTGAAGGCTCTCATGTTATG
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis