Browse Element(s) Details


Os.32955.2.S1_x_at

Description gb:NM_191936.1
DB_XREF= gi:34910955
GEN=OSJNBb0063G05.23
TID=Os.32955.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32955 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative chaperone-like ATPase (OSJNBb0063G05.23), mRNA.
PROD=putative chaperone-like ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4780011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47770Os.10221.1.S1_at11/111+27663108..27666183Nuclear movement protein, expressed
LOC_Os01g47780Os.5908.1.S1_at11/111+27667758..27668798Fasciclin domain containing protein, expressed
LOC_Os01g47790Os.35344.3.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790Os.35344.18.S1_x_at10/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_at7/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47790OsAffx.22940.5.S1_x_at5/111+27672055..27678969transposon protein, putative, Mutator sub-class
LOC_Os01g47800Os.32955.2.S1_x_at11/111+27684185..27690000expressed protein
LOC_Os01g47800Os.32955.1.A1_at11/111+27684185..27690000expressed protein
LOC_Os01g47810NANA1+27693165..27695552S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47820OsAffx.2268.1.S1_at11/111+27702153..27704572S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47830NANA1+27707419..27709605retrotransposon protein, putative, unclassified
LOC_Os01g47840Os.48003.1.A1_at11/111+27713419..27715764S-locus-like receptor protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32955.2.S1_x_at--389--6531Chr01:27688990..27689014 (25 bp)
GATTTCCCTGTGGATGATGTCAAAT
LOC_Os01g47800
Os.32955.2.S1_x_at--382--2851Chr01:27689055..27689079 (25 bp)
AAGTCTCTCAGTTCTGAAACCTCCA
LOC_Os01g47800
Os.32955.2.S1_x_at--783--5551Chr01:27689070..27689094 (25 bp)
GAAACCTCCATGTCTCTACAAATGT
LOC_Os01g47800
Os.32955.2.S1_x_at--423--2991Chr01:27689090..27689114 (25 bp)
AATGTTGCCCTGTGTGTTTCAATGC
LOC_Os01g47800
Os.32955.2.S1_x_at--718--2951Chr01:27689154..27689178 (25 bp)
AAGGCCTAGTCTGCATTGCTTAGCA
LOC_Os01g47800
Os.32955.2.S1_x_at--804--7811Chr01:27689210..27689234 (25 bp)
GGTCAGTGAATCTTCTAGCAACAGT
LOC_Os01g47800
Os.32955.2.S1_x_at--802--2051Chr01:27689248..27689272 (25 bp)
ACTTCTCAAGGTATTGTTGGCTCTG
LOC_Os01g47800
Os.32955.2.S1_x_at--417--6671Chr01:27689323..27689347 (25 bp)
GTTCCAAGGGAGTGCACATGCCATT
LOC_Os01g47800
Os.32955.2.S1_x_at--328--7511Chr01:27689399..27689423 (25 bp)
GTGGACAGCCATTAAGTTTTTTCTT
LOC_Os01g47800
Os.32955.2.S1_x_at--1052--1251Chr01:27689448..27689472 (25 bp)
AGATATCACTGCACCAACTACACTT
LOC_Os01g47800
Os.32955.2.S1_x_at--509--791Chr01:27689493..27689517 (25 bp)
ATGTGTTTGCTCGATACCAGGTTCA
LOC_Os01g47800
Target Sequence 
GATTTCCCTGTGGATGATGTCAAATTAGGTCATTTGGTTAATCCTCAATCACAGGATACCATGAAAAGTCTCTCAGTTCT
GAAACCTCCATGTCTCTACAAATGTTGCCCTGTGTGTTTCAATGCTGTTTATAAGATGGTTCATGATATTCTTTCAAATT
CAGTAAGGCCTAGTCTGCATTGCTTAGCAGTCGATGATATGCATGACCTTTTGTCATCATGGTCAGTGAATCTTCTAGCA
ACAGTTAGAAAATGGTATACTTCTCAAGGTATTGTTGGCTCTGAAGAAAATTCTGGAGAAGGGCATTGTGTTTGTAGCAG
TGATAATGGTTGTGTTCCAAGGGAGTGCACATGCCATTTGGAAAGCAACGAAGATGCTGGAACTATAAAGGATGAGAGCT
ATTATCTAAGTGGACAGCCATTAAGTTTTTTCTTTAAAGATGGTGTATTGATACCACCAGATATCACTGCACCAACTACA
CTTCATTGCAGTTATATGAGATTATGTGTTTGCTCGATACCAGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32955.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis