Browse Element(s) Details


Os.3343.1.S1_at

Description gb:AK063378.1
DB_XREF= gi:32973396
TID=Os.3343.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Conserved hypothetical protein (OSJNBb0061I18.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F06, full insert sequence.
FL= gb:AK063378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2520011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25140Os.12002.1.S1_a_at11/1110+12646015..12651092Alanine aminotransferase 2, putative, expressed
LOC_Os10g25150Os.12002.1.S2_at8/1110+12651629..12652123expressed protein
LOC_Os10g25160OsAffx.8167.2.S1_at11/1110+12657954..12658256hypothetical protein
LOC_Os10g25170Os.56665.1.A1_at11/1110+12660665..12662029AP2 domain containing protein, expressed
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein
LOC_Os10g25190OsAffx.8166.1.S1_at4/1110+12671153..12671479transposon protein, putative, unclassified
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein
LOC_Os10g25210Os.46689.1.S1_at11/1110+12684298..12686563F-box protein interaction domain containing protein, expressed
LOC_Os10g25220Os.46688.1.S1_x_at9/1110+12687132..12691819SAP domain containing protein, expressed
LOC_Os10g25230Os.46849.1.S1_at11/1110+12699796..12700622ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3343.1.S1_at--1024--8571Chr10:12682139..12682163 (25 bp)
TGGTTCGCAGCAGTCATTGGTGATG
LOC_Os10g25200
Os.3343.1.S1_at--319--351Chr10:12682179..12682203 (25 bp)
ATAAGCCCACAGCAAATGGCCGCGA
LOC_Os10g25200
Os.3343.1.S1_at--39--2311Chr10:12682192..12682216 (25 bp)
AAATGGCCGCGATGAGTCCACAGCT
LOC_Os10g25200
Os.3343.1.S1_at--1115--691Chr10:12682203..12682227 (25 bp)
ATGAGTCCACAGCTGAGCTCAGGCA
LOC_Os10g25200
Os.3343.1.S1_at--1030--1571Chr10:12682218..12682242 (25 bp)
AGCTCAGGCACCATGCAGCAAGTGA
LOC_Os10g25200
Os.3343.1.S1_at--782--2951Chr10:12682248..12682272 (25 bp)
AATGTTATCAACCACGTAGCCACAC
LOC_Os10g25200
Os.3343.1.S1_at--83--1391Chr10:12682306..12682330 (25 bp)
AGACCCATGGGTCGGTCAACAGCAT
LOC_Os10g25200
Os.3343.1.S1_at--346--3791Chr10:12682337..12682361 (25 bp)
CTCCCCAATGGAGCAGTTGCAAGGT
LOC_Os10g25200
Os.3343.1.S1_at--662--251Chr10:12682445..12682469 (25 bp)
ATATCGGCAGTGATCAGCACTTTTT
LOC_Os10g25200
Os.3343.1.S1_at--634--1051Chr10:12682501..12682525 (25 bp)
AGGTGTCCTGTAAGTTATAGCCAAT
LOC_Os10g25200
Os.3343.1.S1_at--37--6771Chr10:12682632..12682656 (25 bp)
GTTCAATGGGACTACTTTCTTGTTT
LOC_Os10g25200
Target Sequence 
TGGTTCGCAGCAGTCATTGGTGATGTCGCAGCATCAGCAAATAAGCCCACAGCAAATGGCCGCGATGAGTCCACAGCTGA
GCTCAGGCACCATGCAGCAAGTGAATAACAATGTTATCAACCACGTAGCCACACCAGGCCCTCCTCCTAGCCCGCAGCTC
AGCTCACAGACCCATGGGTCGGTCAACAGCATCGCAAACTCCCCAATGGAGCAGTTGCAAGGTGCCAATAAAGGAGGTCC
AGGGAGCATGTAGTGACGGCAAATAATTGTTTNTGTGATGGACATACAAAATAATGCAAGGTATAAATATCGGCAGTGAT
CAGCACTTTTTNTTATTTGTTGTGGTAAATGATGTTAAAGTTAGGTGTCCTGTAAGTTATAGCCAATAGATGAAGATATT
ATGGAGGATCAGCCTTACGCNAGGGATTTCTGATGTTGTAGATTTTAGATAATGAAATTAGTACCTTTAGGGGATTGGTA
CTGATGAAAGTTTTGTTCAATGGGACTACTTTCTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis