Browse Element(s) Details


Os.33445.1.A1_at

Description gb:AK100553.1
DB_XREF= gi:32985762
TID=Os.33445.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103K14, full insert sequence.
FL= gb:AK100553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4943011/11Possible apospory-associated protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein
LOC_Os05g49470Os.51690.1.S1_at11/115+28273744..28275805expressed protein
LOC_Os05g49480Os.52814.1.S1_at11/115+28277330..28278658transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33445.1.A1_at--108--5731Chr05:28261304..28261328 (25 bp)
GACTGCCTGACGTTGGTAAGACACA
LOC_Os05g49430
Os.33445.1.A1_at--615--1411Chr05:28261322..28261346 (25 bp)
AGACACAATATTCTCTTTGCCACCT
LOC_Os05g49430
Os.33445.1.A1_at--548--4291Chr05:28261344..28261368 (25 bp)
CCTAACCATGGTAACTTTGCTTGAA
LOC_Os05g49430
Os.33445.1.A1_at--214--10671Chr05:28261373..28261397 (25 bp)
TTCCATCATATTCGCTTTATTCCTC
LOC_Os05g49430
Os.33445.1.A1_at--869--3671Chr05:28261387..28261411 (25 bp)
CTTTATTCCTCCCAGTTGTGTGGAA
LOC_Os05g49430
Os.33445.1.A1_at--630--5511Chr05:28261430..28261454 (25 bp)
GAAAAACATCGTGGACTTCGGCGAT
LOC_Os05g49430
Os.33445.1.A1_at--638--2491Chr05:28261465..28261489 (25 bp)
AACAGATGCTGTGCGTTGATGCGGC
LOC_Os05g49430
Os.33445.1.A1_at--1104--5971Chr05:28261499..28261523 (25 bp)
GAGACAAATCACTCTGAAACCGGGA
LOC_Os05g49430
Os.33445.1.A1_at--710--5331Chr05:28261554..28261578 (25 bp)
GAAGTTCCATCGACTAACTGCAGTG
LOC_Os05g49430
Os.33445.1.A1_at--614--351Chr05:28261588..28261612 (25 bp)
ATCAACCCGGTATCATCATTTAGAA
LOC_Os05g49430
Os.33445.1.A1_at--26--10811Chr05:28261728..28261752 (25 bp)
TTGGTCAGCGGTTCGTTTTAAGCTT
LOC_Os05g49430
Target Sequence 
GACTGCCTGACGTTGGTAAGACACAATATTCTCTTTGCCACCTAACCATGGTAACTTTGCTTGAAAAATTTCCATCATAT
TCGCTTTATTCCTCCCAGTTGTGTGGAATCCGTGGGAAAAGAAATCGAAAAACATCGTGGACTTCGGCGATGAGGAGTAC
AAACAGATGCTGTGCGTTGATGCGGCTGCAGCGGAGAGACAAATCACTCTGAAACCGGGAGAGGAGTGGACAGGGAAGCT
TGAGCTTTNTGAAGTTCCATCGACTAACTGCAGTGGCCATNTTGATCAACCCGGTATCATCATTTAGAATATGGCTTGAT
AGTTTAGAATTTTACCATTTTCCTTTTTTACANGAGATCGATATGCTCCTCCTCTGCCATNTTGGTAAAAATTNTTNTTG
NACGTGTACAAAGATTTTACCATNTTGGTCAGCGGTTCGTTTTAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33445.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis