Browse Element(s) Details


Os.33613.1.S1_at

Description gb:AK099840.1
DB_XREF= gi:32985049
TID=Os.33613.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (P0011G08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108C16, full insert sequence.
FL= gb:AK099840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0628011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06330NANA1+3007213..3008966hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33613.1.S1_at--823--1451Chr01:2982385..2982409 (25 bp)
AGAAGATCGTCGACCGGCGGATCGC
LOC_Os01g06280
Os.33613.1.S1_at--918--1891Chr01:2982502..2982526 (25 bp)
ACGTCGTGTGGAGCCTGCAGTTCGT
LOC_Os01g06280
Os.33613.1.S1_at--250--7391Chr01:2982567..2982591 (25 bp)
GTGAGCAGCCTCAACATGGTTCATC
LOC_Os01g06280
Os.33613.1.S1_at--1075--5911Chr01:2982608..2982632 (25 bp)
GAGCTTGCACGCTCGTCAGAGAAGC
LOC_Os01g06280
Os.33613.1.S1_at--982--6551Chr01:2982693..2982717 (25 bp)
GATTACACCGATGCTTCCATGAGAG
LOC_Os01g06280
Os.33613.1.S1_at--607--9231Chr01:2982708..2982732 (25 bp)
TCCATGAGAGGAATCTTCTGGCAAA
LOC_Os01g06280
Os.33613.1.S1_at--55--2991Chr01:2982738..2982762 (25 bp)
AATGTGCGCGGGAGATGATACTGAT
LOC_Os01g06280
Os.33613.1.S1_at--1075--6431Chr01:2982760..2982784 (25 bp)
GATCAGTCATCTTCAAACATTCCAG
LOC_Os01g06280
Os.33613.1.S1_at--875--10051Chr01:2982794..2982818 (25 bp)
TAGTCATCTTCAGACTGGTCAGTTC
LOC_Os01g06280
Os.33613.1.S1_at--490--7831Chr01:2982835..2982859 (25 bp)
GGTCAAAATTCACCTCTCCAGTATC
LOC_Os01g06280
Os.33613.1.S1_at--72--7011Chr01:2982923..2982947 (25 bp)
GTACTGTCCCTACAATGGAGTTCAA
LOC_Os01g06280
Target Sequence 
AGAAGATCGTCGACCGGCGGATCGCCGGGACGGTGAGGCCCGCCGCGCTGAGGAAGTACGGCGAGACGGTGGCCAGGTGC
CTCGCCGACCGCGGCGCCGACCGGCCGGCGATGGAGGACGTCGTGTGGAGCCTGCAGTTCGTGGCGCGGCTGCAGGAGGT
GGACGGCCTCGACGCCTCCGACGTGAGCAGCCTCAACATGGTTCATCAGCTGATGCCGCCGACGAGCTTGCACGCTCGTC
AGAGAAGCGCCGGCGAAAGCGAGACCGGCAGGACGGACGCCGACGAGGACAGCAGTGTGGTAGATGATGATTACACCGAT
GCTTCCATGAGAGGAATCTTCTGGCAAATGGTCAATGTGCGCGGGAGATGATACTGATCAGTCATCTTCAAACATTCCAG
NTCATGAATTAGTCATCTTCAGACTGGTCAGTTCATNGTTGAACATTCCAGGTCAAAATTCACCTCTCCAGTATCCAGTC
GGAAAAAGTGAACAAAGACATACTTAGAATTTAAAATATACTTACCAGTGAAAATTTTGTACTGTCCCTACAATGGAGTT
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis