Browse Element(s) Details


Os.33741.2.S1_x_at

Description gb:AK111771.1
DB_XREF= gi:37988434
TID=Os.33741.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0668C05.22 (P0668C05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074H04, full insert sequence.
FL= gb:AK111771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1232010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12310OsAffx.28413.1.S1_at11/117+6935249..6937380hypothetical protein
LOC_Os07g12320Os.33741.1.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_at11/117+6948238..6950229expressed protein
LOC_Os07g12320Os.33741.2.S1_x_at10/117+6948238..6950229expressed protein
LOC_Os07g12330Os.44345.1.S1_at11/117+6951584..6954587Tryptophan/tyrosine permease family protein
LOC_Os07g12330Os.17442.1.S1_at1/117+6951584..6954587Tryptophan/tyrosine permease family protein
LOC_Os07g12340Os.5549.1.S1_at11/117+6966307..6967558NAC-domain containing protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006364biological_processrRNA processing
GO:0005730cellular_componentnucleolus
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33741.2.S1_x_at--135--6351Chr07:6949578..6949602 (25 bp)
GATGCTCTAGTTTCAGCGTTAGCTC
LOC_Os07g12320
Os.33741.2.S1_x_at--594--2751Chr07:6949690..6949714 (25 bp)
AAGAACTCGTTCTTCTCCTGCTGTT
LOC_Os07g12320
Os.33741.2.S1_x_at--359--2891Chr07:6949894..6949918 (25 bp)
AAGGGATGATTTCACCCATGCTTGC
LOC_Os07g12320
Os.33741.2.S1_x_at--342--4331Chr07:6949909..6949933 (25 bp)
CCATGCTTGCACTTGCCAGTAGATG
LOC_Os07g12320
Os.33741.2.S1_x_at--764--5931NONE
GAGCAGGTGCTTTTCTTGTATCGGA
NONE
Os.33741.2.S1_x_at--1124--6871Chr07:6949950..6949974 (25 bp)
GTATCGGAATTCTTTTTTGGTCTGT
LOC_Os07g12320
Os.33741.2.S1_x_at--348--8791Chr07:6949972..6949996 (25 bp)
TGTTAGTTTACAGTGAGGCATGCCA
LOC_Os07g12320
Os.33741.2.S1_x_at--169--6211Chr07:6949986..6950010 (25 bp)
GAGGCATGCCACATACATGATGATG
LOC_Os07g12320
Os.33741.2.S1_x_at--964--2031Chr07:6950026..6950050 (25 bp)
ACTATTATCGCCACTGAAATTTTGG
LOC_Os07g12320
Os.33741.2.S1_x_at--962--5591Chr07:6950041..6950065 (25 bp)
GAAATTTTGGCTGTCATCCAATCGA
LOC_Os07g12320
Os.33741.2.S1_x_at--117--6511Chr07:6950064..6950088 (25 bp)
GATATACTCTGTTGTGCCGCGAAAA
LOC_Os07g12320
Target Sequence 
GATGCTCTAGTTTCAGCGTTAGCTCGAAACAATCCAAGGAGCATAGTGGCGGTGATGGAGGAGCTAGTTTCAAGGAGAAA
GCTGGTCAGATGCATCGAGAACTTGGACACGGAAGAACTCGTTCTTCTCCTGCTGTTCCTGCACCGAAATGCAACCTTGC
CAAGGTATGCCAGGTTCTTGATGGGGGTGGCAAACAAGGTGCTGGAGATGCGCGCGGATGATATCCGATCAGATGAGAAC
CTAAGGGGTTGTGTTAGAAATCTTAAGAGGATGGCTGCAGAGGAGATTCAGATACAGCACACATTGCAGGGGATCCAAGG
GATGATTTCACCCATGCTTGCACTTGCCAGTAGATGAGCAGGTGCTTTTCTTGTATCGGAATTCTTTTTTGGTCTGTTAG
TTTACAGTGAGGCATGCCACATACATGATGATGTATGCTAGTTTACAAACTATTATCGCCACTGAAATTTTGGCTGTCAT
CCAATCGATATACTCTGTTGTGCCGCGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33741.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis