Browse Element(s) Details


Os.33742.1.S1_at

Description gb:AK059751.1
DB_XREF= gi:32969769
TID=Os.33742.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023124F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B03, full insert sequence.
FL= gb:AK099204.1 gb:AK059751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3275011/11Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os12g195491/11Telomerase reverse transcriptase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32720Os.26803.1.S1_at11/1111+18829542..18834002Zinc knuckle family protein, expressed
LOC_Os11g32730OsAffx.19130.1.S1_at11/1111+18836274..18836675hypothetical protein
LOC_Os11g32740OsAffx.19131.1.S1_at11/1111+18847494..18847802hypothetical protein
LOC_Os11g32750Os.33742.1.S1_at11/1111+18851426..18855715Nudix hydrolase 13, mitochondrial precursor, putative, expressed
LOC_Os11g32759Os.11375.1.S1_at11/1111+18853271..18856610expressed protein
LOC_Os11g32759Os.9786.1.S1_at10/1111+18853271..18856610expressed protein
LOC_Os11g32770OsAffx.26050.2.S2_x_at3/1111+18857091..18857414Ribulose bisphosphate carboxylase large chain, putative
LOC_Os11g32780Os.9454.1.S1_at11/1111+18861036..18864624expressed protein
LOC_Os11g32790Os.57204.1.S1_at1/1111+18867690..18869106hypothetical protein
LOC_Os11g32800NANA11+18873982..18874634hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0003720molecular_functiontelomerase activity
GO:0003721molecular_functiontelomeric template RNA reverse transcriptase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33742.1.S1_at--363--5651Chr11:18853560..18853584 (25 bp)
GACAGAGTTGCTGGAGTCATGGCCT
LOC_Os11g32750
Os.33742.1.S1_at--1020--5931Chr11:18853585..18853609 (25 bp)
GAGCAGACCACCCATGGCAGGAGAT
LOC_Os11g32750
Os.33742.1.S1_at--563--8431Chr11:18853757..18853781 (25 bp)
GGCCTCTGCAGGTACGACTGGATGC
LOC_Os11g32750
Os.33742.1.S1_at--794--8071Chr11:18853907..18853931 (25 bp)
GGAGCTGTGGCATTGTGCTGATTAA
LOC_Os11g32750
Os.33742.1.S1_at--480--8851Chr11:18853961..18853985 (25 bp)
TGATGCTGATGATCCCTGAGAGGCA
LOC_Os11g32750
Os.33742.1.S1_at--1003--8611Chr11:18854027..18854051 (25 bp)
TGGTGATGGTTCAGGCTTTCTCTCA
LOC_Os11g32750
Os.33742.1.S1_at--1141--5031Chr11:18854067..18854091 (25 bp)
GCAGACCTGCAGTCATGCAACAATT
LOC_Os11g32750
Os.33742.1.S1_at--859--6251Chr11:18854121..18854145 (25 bp)
GATGTCCAATCTAATAACTGTTCCT
LOC_Os11g32750
Os.33742.1.S1_at--368--8812Chr11:18854139..18854163 (25 bp)
TGTTCCTTAATCCTTACTGCTGAGA
LOC_Os11g32750
Os.33742.1.S1_at--457--1191Chr11:18854178..18854202 (25 bp)
AGTAGCTAACCATCTTCTGGACTGG
LOC_Os11g32750
Os.33742.1.S1_at--208--10251Chr11:18854238..18854262 (25 bp)
TTTGAGAAATCTCCCGTGTTCCAAG
LOC_Os11g32750
Target Sequence 
GACAGAGTTGCTGGAGTCATGGCCTGAGCAGACCACCCATGGCAGGAGATGGGTGCCGGTTGAGGAGGCGTACGGCCTCT
GCAGGTACGACTGGATGCGAGAAGCGCTGGACAAGCTCAAGGAGCAGCTCCTGTTCGCCGCCGGCGATGACCTCCGCGCC
TCGCCGTCGCCGGNAGCTGGACTCGTCGGCCNGGCCTGTACATNGGTGATNGCCACNCGGTGNNGCTGAAGGAGCTGTGG
CATTGTGCTGATTAATGCTCCNTGATCTGCTGCTGCTGCTGCTCATGATGCTGATGATCCCTGAGAGGCAGAGAACCTGA
ACTTCCAGGAGGCAAAGTTTCAGATGTTGAGTGGTGATGGTTCAGGCTTTCTCTCACCTGCAGNAAGGGTTGCAGACCTG
CAGTCATGCAACAATTTAAGATGTTAATTCTGCAATCATCAAAATGATGTCCAATCTAATAACTGTTCCTTAATCCTTAC
TGCTGAGAACTAATGGGAAGAAAGTAGCTAACCATCTTCTGGACTGGANGAAATTGTAACATTGCGACATGTTCATTAAA
AGTTTGAGAAATCTCCCGTGTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis