Browse Element(s) Details


Os.33780.1.S1_a_at

Description gb:AK100130.1
DB_XREF= gi:32985339
TID=Os.33780.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009O07, full insert sequence.
FL= gb:AK100130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0822011/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08200Os.21877.1.S1_at11/118+4669948..4674157mRNA capping enzyme, large subunit family protein, expressed
LOC_Os08g08210Os.18478.1.S1_at10/118+4684772..4690386SET domain-containing protein, putative, expressed
LOC_Os08g08220Os.33780.1.S1_a_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08220Os.33780.2.S1_x_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08230NANA8+4702894..4703865Kinesin, putative, expressed
LOC_Os08g08240NANA8+4706637..4710786hAT family dimerisation domain containing protein, expressed
LOC_Os08g08250OsAffx.29098.1.S1_at11/118+4712480..4712787hypothetical protein
LOC_Os08g08260OsAffx.5747.1.S1_at11/118+4721424..4722716hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33780.1.S1_a_at--631--9071Chr08:4700968..4700992 (25 bp)
TGCTTGCCATGTAATTCTCCTTGAT
LOC_Os08g08220
Os.33780.1.S1_a_at--440--31Chr08:4701044..4701068 (25 bp)
ATTGGTCAGACTCGTCCTGTTACTG
LOC_Os08g08220
Os.33780.1.S1_a_at--394--6391Chr08:4701101..4701122 (22 bp)
GATCGCATTTTAGCTCTGCAGGAGG
LOC_Os08g08220
Os.33780.1.S1_a_at--1145--3491Chr08:4701620..4701644 (25 bp)
CATGGTTAGCTCTGCTTTTGGCGAA
LOC_Os08g08220
Os.33780.1.S1_a_at--330--2751Chr08:4701643..4701667 (25 bp)
AAGACAAATCGGGTGGCCACGCGAC
LOC_Os08g08220
Os.33780.1.S1_a_at--905--6791Chr08:4701704..4701728 (25 bp)
GTTTTGATTGGAAGCACCCGTGATC
LOC_Os08g08220
Os.33780.1.S1_a_at--313--1811Chr08:4701719..4701743 (25 bp)
ACCCGTGATCTCTGCGATACAATGA
LOC_Os08g08220
Os.33780.1.S1_a_at--353--7011Chr08:4701822..4701846 (25 bp)
GTACTGCGGATTTGTGTCCTTCCAT
LOC_Os08g08220
Os.33780.1.S1_a_at--505--9351Chr08:4701850..4701874 (25 bp)
TCGCAGCAGCTCCAGTTTTGTCATG
LOC_Os08g08220
Os.33780.1.S1_a_at--830--4891Chr08:4701903..4701927 (25 bp)
GCTTAGTCGCTAGCCTGTGTTGAAT
LOC_Os08g08220
Os.33780.1.S1_a_at--989--6651Chr08:4701921..4701945 (25 bp)
GTTGAATATTTGACCCCAGCTTGTA
LOC_Os08g08220
Target Sequence 
TGCTTGCCATGTAATTCTCCTTGATCTTTGGTGGAATCCTTATGCTGAGGACCAGGCAATTGATAGAGCACACAGAATTG
GTCAGACTCGTCCTGTTACTGTCTCCCGTTTAACCATTAAAGATACGGTGGAAGATCGCATTTTAGCTCTGCAGGAGGAA
AAGAGAGCCATGGTTAGCTCTGCTTTTGGCGAAGACAAATCGGGTGGCCACGCGACTCGGCTCACCGTGGATGATCTGAA
GTATCTATTTAGGTTTTGATTGGAAGCACCCGTGATCTCTGCGATACAATGACATTGTATAGTAGCCTGTGATCTTTACC
TAGATGCAACTCCAACAGCCGTGTACCGCTGCTGAGTATTTTGGTGCGAGGTACTGCGGATTTGTGTCCTTCCATGGCTC
GCAGCAGCTCCAGTTTTGTCATGCTCTGATTTGCTAGACGAAATGTAGTAGGCTTAGTCGCTAGCCTGTGTTGAATATTT
GACCCCAGCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33780.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis