Browse Element(s) Details


Os.3389.2.S1_at

Description gb:AK061437.1
DB_XREF= gi:32971455
TID=Os.3389.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3389 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for myb factor, 1308 bp
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-B04, full insert sequence.
FL= gb:AK061437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0315011/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os11g034404/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03100Os.15794.1.S1_at11/1112+1171749..1174786secondary cell wall-related glycosyltransferase family 47, putative, expressed
LOC_Os12g03110Os.16784.1.S1_at8/1112+1179462..1180200ZF-HD protein dimerisation region containing protein
LOC_Os12g03120OsAffx.19462.1.S1_at11/1112+1182405..1182748hypothetical protein
LOC_Os12g03130Os.48443.1.S1_at11/1112+1188043..1190508CDC45-like protein, expressed
LOC_Os12g03140OsAffx.19463.1.S1_at7/1112+1191232..1192383hypothetical protein
LOC_Os12g03150Os.3389.2.S1_at11/1112+1199560..1200971Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g03160OsAffx.13097.1.S1_s_at11/1112+1202491..1205222hypothetical protein
LOC_Os12g03170NANA12+1210889..1211347hypothetical protein
LOC_Os12g03180Os.28138.1.S1_at9/1112+1211877..1215296protein kinase, putative, expressed
LOC_Os12g03190Os.9497.1.S1_at10/1112+1215713..1219583homoserine dehydrogenase family protein, expressed
LOC_Os12g03200NANA12+1219955..1224034MatE family protein, expressed
LOC_Os12g03210NANA12+1225729..1228934transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009416biological_processresponse to light stimulus
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010118biological_processstomatal movement
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3389.2.S1_at--1005--4692Chr12:1200087..1200111 (25 bp)
GCGGCTATTACGACGACGTCAAGCC
LOC_Os12g03150
Os.3389.2.S1_at--840--4912Chr12:1199991..1200015 (25 bp)
GCTTCGACGTTCATCAGCAGCACCA
LOC_Os12g03150
Os.3389.2.S1_at--528--4012Chr12:1199952..1199976 (25 bp)
CGTCGTTCATGGAGTACGGCGGCTA
LOC_Os12g03150
Os.3389.2.S1_at--792--4854Chr07:14649620..14649810 (25 bp)
GCTACGGCGACGAGAGCAAGCAGCA
NONE
Os.3389.2.S1_at--112--511Chr12:1199864..1199888 (25 bp)
ATCGATCGAGAAGTGGCTGTTCGAC
LOC_Os12g03150
Os.3389.2.S1_at--586--9092Chr12:1199788..1199812 (25 bp)
TGCTCCGTCCCAATGATGTTTTAAT
LOC_Os12g03150
Os.3389.2.S1_at--75--5532Chr12:1199746..1199770 (25 bp)
GAAAACACTGTCACATTCGATACGT
LOC_Os12g03150
Os.3389.2.S1_at--773--3592Chr12:1199733..1199757 (25 bp)
CATTCGATACGTATACTGTGCACAT
LOC_Os12g03150
Os.3389.2.S1_at--635--10232Chr12:1199612..1199636 (25 bp)
TTTGGATGTGTGACCGGTTGTACGT
LOC_Os12g03150
Os.3389.2.S1_at--1162--6632Chr12:1199596..1199620 (25 bp)
GTTGTACGTGTGTCACTGGCATCAA
LOC_Os12g03150
Os.3389.2.S1_at--1084--8492Chr12:1199580..1199604 (25 bp)
TGGCATCAAACGTCAGCACAAGAAT
LOC_Os12g03150
Target Sequence 
GCGGCTATTACGACGACGTCAAGCCCGCCGTCGATGTCGNCNGCAACCCCTTGCTGTCGTCCTTCGACTGCATGTCCGGC
GCCGACCTGGACTGCTGCTTCGACGTTCATCAGCAGCACCAGCAGCAGCAGCCGGCGTCGTTCATGGAGTACGGCGGCTA
TGGCGGCGGCTACGGCGACGAGAGCAAGCAGCAGCTGATGAACCAGGCAGCNCCGCCGCTGTCATCGATCGAGAAGTGGC
TGTTCGACGAGGCGGCGGCGGAGCAGGTCGCCGACCTCATGGACCTCTCCGACGGTTGCTGCTCCGTCCCAATGATGTTT
TAATTAGCTCAAGTAATGAAAGAAAACACTGTCACATTCGATACGTATACTGTGCACATCAATAATTAATTTTACATTAA
TTAGCTAGATGCATGTTTAGGTTAAACTATTGTTGTTACTATACTTGAAGCTAGAAGATTTGTTTTATTTGTAGTTTTGG
ATGTGTGACCGGTTGTACGTGTGTCACTGGCATCAAACGTCAGCACAAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3389.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis