Browse Element(s) Details


Os.3401.1.S1_at

Description gb:AB125304.1
DB_XREF= gi:46917333
GEN=SAPK3
TID=Os.3401.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.3401 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SAPK3 mRNA for serinethreonine protein kinase SAPK3, complete cds.
PROD=serinethreonine protein kinase SAPK3
FL= gb:AB125304.1 gb:AK059800.1 gb:D88399.1 gb:AK103690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4149011/11Serine/threonine-protein kinase SAPK3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed
LOC_Os10g41534Os.47036.1.S1_s_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.28292.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.50294.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.11453.1.S1_x_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3401.1.S1_at--826--7871Chr10:21966147..21966171 (25 bp)
GGTTCATACCCGTTTGAAGATCCAG
LOC_Os10g41490
Os.3401.1.S1_at--911--5191Chr10:21965985..21966009 (25 bp)
GAATTCTTGGCGTGCAATACTCCAT
LOC_Os10g41490
Os.3401.1.S1_at--294--2011Chr10:21965955..21965979 (25 bp)
ACTACGTGAGGGTGTCTTCCGACTG
LOC_Os10g41490
Os.3401.1.S1_at--975--891Chr10:21965929..21965953 (25 bp)
AGGCGCCTTCTATCTCAAATATTTG
LOC_Os10g41490
Os.3401.1.S1_at--676--171Chr10:21965912..21965933 (22 bp)
ATTTGTTGCCGATCCTTCAAAGAGG
LOC_Os10g41490
Os.3401.1.S1_at--1137--2711Chr10:21965598..21965622 (25 bp)
AAGCACACGTGGTTTCTGAAGAATC
LOC_Os10g41490
Os.3401.1.S1_at--633--1971Chr10:21965369..21965390 (22 bp)
ACTGACCATCCATGATCCATATTGC
LOC_Os10g41490
Os.3401.1.S1_at--816--811Chr10:21965338..21965362 (25 bp)
ATGGTCGTTGTGCTGCAGCTGTAAA
LOC_Os10g41490
Os.3401.1.S1_at--834--8211Chr10:21965305..21965329 (25 bp)
GGAATATACGTGATCGCCAGACCAA
LOC_Os10g41490
Os.3401.1.S1_at--611--6331Chr10:21965264..21965288 (25 bp)
GATGCATTTTCTGCCGTGTATACTC
LOC_Os10g41490
Os.3401.1.S1_at--14--3372Chr10:21965237..21965261 (25 bp)
CACCGGATTTTCCTGCAGCGTAAAT
LOC_Os10g41490
Target Sequence 
GGTTCATACCCGTTTGAAGATCCAGGTGATCCGAGGAATTTCCGCAAAACGATCAGCAGAATTCTTGGCGTGCAATACTC
CATCCCGGACTACGTGAGGGTGTCTTCCGACTGCAGGCGCCTTCTATCTCAAATATTTGTTGCCGATCCTTCAAAGAGGA
TCACGATCCCTGAGATAAAGAAGCACACGTGGTTTCTGAAGAATCTGCCAAAGGAGATATCGGAGAGGGAGAAGGCCGAC
TACAAGGACACGGACGCCGCCCCTCCGACGCAGGCCGTCGAGGAGATCATGCGGATCATCCAGGAGGCCAAGGTCCCCGG
CGACATGGCCGCCGCCGACCCGGCGCTGCTCGCGGAGCTCGCCGAGCTGAAGAGCGACGACGAAGAGGAGGCCGCCGATG
AGTATGACACCTACTGACCATCCATGATCCATATTGCATCCATGGTCGTTGTGCTGCAGCTGTAAATATGATCCGGAATA
TACGTGATCGCCAGACCAAATGATATGCGTATTCTGATGCATTTTCTGCCGTGTATACTCTGCACCGGATTTTCCTGCAG
CGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis