Browse Element(s) Details


Os.34030.1.S1_a_at

Description gb:AK073089.1
DB_XREF= gi:32983112
TID=Os.34030.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.34030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 4, At4g11800 (P0617C02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024P06, full insert sequence.
FL= gb:AK064319.1 gb:AK073089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0154011/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01500NANA7+311964..317734retrotransposon protein, putative, unclassified
LOC_Os07g01510NANA7+318364..321621retrotransposon protein, putative, unclassified
LOC_Os07g01520Os.20517.1.S1_at3/117+325036..327480hypothetical protein
LOC_Os07g01530Os.37338.1.S1_at11/117+331575..333127expressed protein
LOC_Os07g01540Os.34030.1.S1_a_at11/117+333525..342004calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g01550Os.20595.1.S1_a_at11/117+342234..348402Leucine Rich Repeat family protein, expressed
LOC_Os07g01560Os.316.1.S1_at11/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560Os.35004.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560OsAffx.7485.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01570NANA7+356762..357220hypothetical protein
LOC_Os07g01580OsAffx.21060.1.S1_at11/117+362611..363127expressed protein
LOC_Os07g01590NANA7+365815..367129hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34030.1.S1_a_at--356--10191Chr07:334266..334290 (25 bp)
TATATATCTGCATCAACTGGTTCCA
LOC_Os07g01540
Os.34030.1.S1_a_at--330--2531Chr07:334252..334276 (25 bp)
AACTGGTTCCACATACACTTTGATG
LOC_Os07g01540
Os.34030.1.S1_a_at--277--3691Chr07:334235..334259 (25 bp)
CTTTGATGAAGCCTTCTCTTCGTTG
LOC_Os07g01540
Os.34030.1.S1_a_at--333--4451Chr07:334225..334249 (25 bp)
GCCTTCTCTTCGTTGCGTATTGCAA
LOC_Os07g01540
Os.34030.1.S1_a_at--948--411Chr07:334193..334217 (25 bp)
ATCATTCACAAGATTCCACATTAAG
LOC_Os07g01540
Os.34030.1.S1_a_at--641--7831Chr07:334162..334186 (25 bp)
GGTAACCTGGAAATATTCACGCTTG
LOC_Os07g01540
Os.34030.1.S1_a_at--902--5571Chr07:334153..334177 (25 bp)
GAAATATTCACGCTTGCAGTAGACA
LOC_Os07g01540
Os.34030.1.S1_a_at--417--5031Chr07:333975..334162 (25 bp)
GCAGTAGACAAGGTCCCAAAGGATT
LOC_Os07g01540
Os.34030.1.S1_a_at--314--10811Chr07:333952..333976 (25 bp)
TTGGAAATTGGATCCCAAGTGGGAG
LOC_Os07g01540
Os.34030.1.S1_a_at--439--8151Chr07:333922..333946 (25 bp)
GGAAAGGAGGCCTCATCAGCTCAGC
LOC_Os07g01540
Os.34030.1.S1_a_at--418--1511Chr07:333887..333911 (25 bp)
AGCACCCCAGCAAGTGGAGGTCATC
LOC_Os07g01540
Target Sequence 
TATATATCTGCATCAACTGGTTCCACATACACTTTGATGAAGCCTTCTCTTCGTTGCGTATTGCAAACTACAAATCATTC
ACAAGATTCCACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAGGTCCCAAAGGATTGGAAATT
GGATCCCAAGTGGGAGGCAGAGGAAAGGAGGCCTCATCAGCTCAGCCATCACCGGAAGCACCCCAGCAAGTGGAGGTCAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34030.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis