Browse Element(s) Details


Os.34139.1.S1_at

Description gb:AK072710.1
DB_XREF= gi:32982733
TID=Os.34139.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142K02, full insert sequence.
FL= gb:AK072710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g046306/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04580OsAffx.29031.1.S1_at11/118+2277339..2279865csAtPR5, putative, expressed
LOC_Os08g04590OsAffx.16827.1.S1_at11/118+2283046..2287271csAtPR5, putative
LOC_Os08g04600NANA8+2288082..2288480hypothetical protein
LOC_Os08g04610OsAffx.5703.1.S1_at11/118+2290348..2291032hypothetical protein
LOC_Os08g04620Os.27768.1.S1_at11/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04620Os.34006.1.S1_x_at1/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04630Os.34139.1.S1_at6/118+2304024..2308749EF hand family protein, expressed
LOC_Os08g04640OsAffx.29032.1.S1_at11/118+2314093..2314650expressed protein
LOC_Os08g04650Os.53290.1.S1_at11/118+2316203..2317294pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g04660OsAffx.16828.1.S1_at11/118+2323968..2324393hypothetical protein
LOC_Os08g04670OsAffx.5705.1.S1_at11/118+2325991..2326566expressed protein
LOC_Os08g04680OsAffx.29033.1.S1_at4/118+2329913..2330820hypothetical protein
LOC_Os08g04690NANA8+2332315..2333011expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0015036molecular_functiondisulfide oxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34139.1.S1_at--66--3131Chr08:2304302..2304326 (25 bp)
AATTTGCCCCACTAGGAGGTGAGCA
LOC_Os08g04630
Os.34139.1.S1_at--298--9031Chr08:2304271..2304295 (25 bp)
TGCACAGCTCCCTGGTGATTGGATC
LOC_Os08g04630
Os.34139.1.S1_at--173--6611Chr08:2304255..2304279 (25 bp)
GATTGGATCTCCATTGGCCACAGCA
LOC_Os08g04630
Os.34139.1.S1_at--206--8491Chr08:2304225..2304249 (25 bp)
TGGCTCTGGTATTCTGTCTACGCAA
LOC_Os08g04630
Os.34139.1.S1_at--901--1071Chr08:2304065..2304089 (25 bp)
AGGGCACTGGTGATCTCTGACTGGA
LOC_Os08g04630
Os.34139.1.S1_at--65--9351Chr08:2304036..2304060 (25 bp)
TCGCTTTATCTTCGGTAGGGACTCA
LOC_Os08g04630
Os.34139.1.S1_at--959--9771Chr08:2303957..2303981 (25 bp)
TAAGTGCATCAGTAGTGCCTGCCTC
NONE
Os.34139.1.S1_at--109--10371Chr08:2303865..2303889 (25 bp)
TTTTTCTTACATAGTGCACCACGGA
NONE
Os.34139.1.S1_at--826--1111Chr08:2303808..2303832 (25 bp)
AGTGTTGTACTTTTGCGGCATGAGC
NONE
Os.34139.1.S1_at--1005--8891Chr08:2303788..2303812 (25 bp)
TGAGCAAACCTGCAGATTCTTTAGT
NONE
Os.34139.1.S1_at--1024--5511Chr08:2303734..2303758 (25 bp)
GAAAACCACTTTGGACCTGACCTCT
NONE
Target Sequence 
AATTTGCCCCACTAGGAGGTGAGCAGACTGCTGCACAGCTCCCTGGTGATTGGATCTCCATTGGCCACAGCACACAGTGG
CTCTGGTATTCTGTCTACGCAACTAAACAAATAAGCTGGCGCACGAGGGCACTGGTGATCTCTGACTGGAGCCGTCGCTT
TATCTTCGGTAGGGACTCAAGTTGCATATAGTCAAGAAGGAAAATATTTTGTTGTGACATATTCATCAGAAGCTAAGTGC
ATCAGTAGTGCCTGCCTCCCACTCGAGTTTGTTTCTGCAAATATATATTCTTTTTGGTTAGGAAAGAATAAAAGTTACCC
TTTTTTTTTCTTACATAGTGCACCACGGAGGAAAAATTCCCTTTGTACCTTTCTTTTGAAGAGTGTTGTACTTTTGCGGC
ATGAGCAAACCTGCAGATTCTTTAGTAGTTTCTTTACCTTAAAAGATAAGCAAAAGAAAACCACTTTGGACCTGACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis