Browse Element(s) Details


Os.34196.1.S1_at

Description gb:AK072492.1
DB_XREF= gi:32982515
TID=Os.34196.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1148D12.10 (B1148D12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131P12, full insert sequence.
FL= gb:AK072492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6011011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60070OsAffx.23867.1.S1_at11/111+35072467..35072676hypothetical protein
LOC_Os01g60080Os.12300.1.S1_at11/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60080OsAffx.27264.1.S1_s_at2/111+35073709..35076363L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os01g60090Os.40360.1.S1_x_at1/111+35079477..35081501hypothetical protein
LOC_Os01g60100NANA1+35082191..35084502hAT family dimerisation domain containing protein
LOC_Os01g60110Os.34196.1.S1_at11/111+35096211..35099217expressed protein
LOC_Os01g60120Os.8845.1.S1_at11/111+35102974..35107712expressed protein
LOC_Os01g60130OsAffx.11673.2.S1_at11/111+35112250..35113259hypothetical protein
LOC_Os01g60130OsAffx.11673.1.S1_at3/111+35112250..35113259hypothetical protein
LOC_Os01g60140OsAffx.23869.1.S1_at11/111+35115389..35118260cation/hydrogen exchanger, putative, expressed
LOC_Os01g60150NANA1+35123100..35123507hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34196.1.S1_at--618--7951Chr01:35096734..35096758 (25 bp)
GGATCCAACTTACCGAGACTTCATG
LOC_Os01g60110
Os.34196.1.S1_at--481--2631Chr01:35096658..35096682 (25 bp)
AACCTGGATAGGTACCTGGAGCTCC
LOC_Os01g60110
Os.34196.1.S1_at--753--9671Chr01:35096566..35096590 (25 bp)
TCACCTTCACGAGTTGTCCGTTAAC
LOC_Os01g60110
Os.34196.1.S1_at--458--8951Chr01:35096538..35096562 (25 bp)
TGACAACCTTCGCTCAAACACTAAT
LOC_Os01g60110
Os.34196.1.S1_at--721--3311Chr01:35096520..35096544 (25 bp)
CACTAATCTACCATTGCTTCTTTTC
LOC_Os01g60110
Os.34196.1.S1_at--895--2351Chr01:35096454..35096478 (25 bp)
AAAGCTGATATTTTGCATTGCCGAG
LOC_Os01g60110
Os.34196.1.S1_at--200--7531Chr01:35096429..35096453 (25 bp)
GTGGACATATTTCTTTTGCGACCCT
LOC_Os01g60110
Os.34196.1.S1_at--20--9111Chr01:35096413..35096437 (25 bp)
TGCGACCCTTTTTATGGTCTTCCAT
LOC_Os01g60110
Os.34196.1.S1_at--674--251Chr01:35096287..35096311 (25 bp)
ATATGACCAGAAGCTTTACCGAGAG
LOC_Os01g60110
Os.34196.1.S1_at--170--6011Chr01:35096267..35096291 (25 bp)
GAGAGCTGTGTATCTCTGCAGCCAC
LOC_Os01g60110
Os.34196.1.S1_at--1155--3371Chr01:35096249..35096273 (25 bp)
CAGCCACTGCTAATCTACTGTGCAA
LOC_Os01g60110
Target Sequence 
GGATCCAACTTACCGAGACTTCATGGAGAGGCTGTTTGAGTCTCGGCAGAAGAAGCTGATTCAGAGGCAGAACTTCAACC
TGGATAGGTACCTGGAGCTCCAGAGGCGCTGTAAAGGTCCTTTGGAGAAGATGTGTGGCACAAACCAAACTCCCAACCCT
GACATGGCTCACCTTCACGAGTTGTCCGTTAACAAATGACAACCTTCGCTCAAACACTAATCTACCATTGCTTCTTTTCT
TGTTCAATTTTCTTGGAGTAATGATCAAGAAAATACTAGCAAAGCTGATATTTTGCATTGCCGAGGTGGACATATTTCTT
TTGCGACCCTTTTTATGGTCTTCCATTATGCAAATGTGTAGGTTTAATAGCTACTATAATCCTTTTTTGTAACAATGCTG
AAGCACAAGCACATGATAATTGGAAGGAAAGCTTTACATGTATGATCATATGACCAGAAGCTTTACCGAGAGCTGTGTAT
CTCTGCAGCCACTGCTAATCTACTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis