Browse Element(s) Details


Os.8845.1.S1_at

Description gb:AK065721.1
DB_XREF= gi:32975739
TID=Os.8845.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1148D12.11 (B1148D12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038F20, full insert sequence.
FL= gb:AK065721.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6012011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60090Os.40360.1.S1_x_at1/111+35079477..35081501hypothetical protein
LOC_Os01g60100NANA1+35082191..35084502hAT family dimerisation domain containing protein
LOC_Os01g60110Os.34196.1.S1_at11/111+35096211..35099217expressed protein
LOC_Os01g60120Os.8845.1.S1_at11/111+35102974..35107712expressed protein
LOC_Os01g60130OsAffx.11673.2.S1_at11/111+35112250..35113259hypothetical protein
LOC_Os01g60130OsAffx.11673.1.S1_at3/111+35112250..35113259hypothetical protein
LOC_Os01g60140OsAffx.23869.1.S1_at11/111+35115389..35118260cation/hydrogen exchanger, putative, expressed
LOC_Os01g60150NANA1+35123100..35123507hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_x_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60170Os.42186.1.S1_at11/111+35128008..35128880expressed protein
LOC_Os01g60180NANA1+35130341..35130895hypothetical protein
LOC_Os01g60190Os.4899.1.S1_a_at11/111+35131159..351349052,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8845.1.S1_at--200--8851Chr01:35103528..35103549 (22 bp)
TGATCAGGTGAAGTCCATCTTCCCC
LOC_Os01g60120
Os.8845.1.S1_at--79--4191Chr01:35103505..35103529 (25 bp)
CCCTGGGCTTCTACAGTATACTGAC
LOC_Os01g60120
Os.8845.1.S1_at--893--4571Chr01:35103470..35103494 (25 bp)
GCGCTGGCAGTGATGAACCTATTTT
LOC_Os01g60120
Os.8845.1.S1_at--15--2091Chr01:35103268..35103292 (25 bp)
ACATTTGGGCGTTTTCTATTCATTA
LOC_Os01g60120
Os.8845.1.S1_at--55--9751Chr01:35103230..35103254 (25 bp)
TCAATTCTAATTGCCTGCGAGTGTG
LOC_Os01g60120
Os.8845.1.S1_at--561--9851Chr01:35103167..35103191 (25 bp)
TACAATAATTCTAACCTCTCCTCTT
LOC_Os01g60120
Os.8845.1.S1_at--856--10491Chr01:35103141..35103165 (25 bp)
TTAATCGTCCATCCAGGCAACTGTA
LOC_Os01g60120
Os.8845.1.S1_at--184--10431Chr01:35103109..35103133 (25 bp)
TTATAACAGCATTGTCACTCCTCGC
LOC_Os01g60120
Os.8845.1.S1_at--400--10851Chr01:35103084..35103108 (25 bp)
TTGGAGCTGCTTACCTACAGACACA
LOC_Os01g60120
Os.8845.1.S1_at--939--6991Chr01:35103049..35103073 (25 bp)
GTACTATCGAACTGTCGGCAACTTG
LOC_Os01g60120
Os.8845.1.S1_at--85--9051Chr01:35103026..35103050 (25 bp)
TGCAGCAATTTTCGTGGACTTCCAC
LOC_Os01g60120
Target Sequence 
TGATCAGGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCGGCGCTGGCAGTGATGAACCTAT
TTTGGTTCTGGAAGATATTCAAGGGAATGTTGAAGACCCTGTCTAAAAGGAGACAGCAAAGTGAAAACGGAAAGGCAGAG
TAGAACTTACAAGGAAGGTGGAAGGAGGTTTTGTTCACTTTTATTGTTAGTGCGTCTAACTTTCGACAAATCAAAGTTAA
ACATCCTTTGTACTTACATTACATTTGGGCGTTTTCTATTCATTAGTAGTATATCTTTTCAATTCTAATTGCCTGCGAGT
GTGAGAACTTTANTTGTAGAGTAGCCTGCATACTGCAGTCACTACAATAATTCTAACCTCTCCTCTTTTTAATCGTCCAT
CCAGGCAACTGTACACTATCTTATAACAGCATTGTCACTCCTCGCTTGGAGCTGCTTACCTACAGACACACAGTAATATT
GTACTATCGAACTGTCGGCAACTTGCAGCAATTTTCGTGGACTTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis