Browse Element(s) Details


Os.4899.1.S1_a_at

Description gb:AK060836.1
DB_XREF= gi:32970854
TID=Os.4899.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.4899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (B1148D12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C10, full insert sequence.
FL= gb:AK110143.1 gb:AK060836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6019011/112,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60120Os.8845.1.S1_at11/111+35102974..35107712expressed protein
LOC_Os01g60130OsAffx.11673.2.S1_at11/111+35112250..35113259hypothetical protein
LOC_Os01g60130OsAffx.11673.1.S1_at3/111+35112250..35113259hypothetical protein
LOC_Os01g60140OsAffx.23869.1.S1_at11/111+35115389..35118260cation/hydrogen exchanger, putative, expressed
LOC_Os01g60150NANA1+35123100..35123507hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_x_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60170Os.42186.1.S1_at11/111+35128008..35128880expressed protein
LOC_Os01g60180NANA1+35130341..35130895hypothetical protein
LOC_Os01g60190Os.4899.1.S1_a_at11/111+35131159..351349052,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os01g60200Os.6496.1.S1_a_at11/111+35135032..35139051expressed protein
LOC_Os01g60210NANA1+35149827..35150159transposon protein, putative, unclassified
LOC_Os01g60220NANA1+35150794..35156949transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046537molecular_function2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4899.1.S1_a_at--878--2811Chr01:35134136..35134159 (24 bp)
AAGATTATTTTGGACGCGATTGAAC
LOC_Os01g60190
Os.4899.1.S1_a_at--94--7511Chr01:35134166..35134190 (25 bp)
GTGGTATTTATCTTGTCACCGCTGA
LOC_Os01g60190
Os.4899.1.S1_a_at--145--7111Chr01:35134180..35134204 (25 bp)
GTCACCGCTGATCATGGAAATGCTG
LOC_Os01g60190
Os.4899.1.S1_a_at--1112--2731Chr01:35134218..35134242 (25 bp)
AAGAAACAAATCTGGCCAGCCACTT
LOC_Os01g60190
Os.4899.1.S1_a_at--694--5451Chr01:35134251..35134275 (25 bp)
GAACGGTGGTATCCAGATTCTTACC
LOC_Os01g60190
Os.4899.1.S1_a_at--810--3371Chr01:35134446..35134465 (20 bp)
CAGCCGGTCCCGGTTGCTATTGGAG
LOC_Os01g60190
Os.4899.1.S1_a_at--623--10651Chr01:35134454..35134478 (25 bp)
TTGCTATTGGAGGTCCCGGTCTTCA
LOC_Os01g60190
Os.4899.1.S1_a_at--349--4271Chr01:35134480..35134504 (25 bp)
CCTGGTGTGAAATTCCGGTCTGACA
LOC_Os01g60190
Os.4899.1.S1_a_at--573--9091Chr01:35134530..35134554 (25 bp)
TGCTGCAACCGTAATGAACTTCCAT
LOC_Os01g60190
Os.4899.1.S1_a_at--1145--811Chr01:35134553..35134577 (25 bp)
ATGGTTTCGAGGCTCCTGCTGACTA
LOC_Os01g60190
Os.4899.1.S1_a_at--232--5431Chr01:35134579..35134603 (25 bp)
GAACCAACCCTCATTGAAGTTGTGG
LOC_Os01g60190
Target Sequence 
AAGATTATTTTGGACGCGATTGAACAAGTCGGTGGTATTTATCTTGTCACCGCTGATCATGGAAATGCTGAGGATATGGT
GAAAAGAAACAAATCTGGCCAGCCACTTCTCGACAAGAACGGTGGTATCCAGATTCTTACCTCACATACTCTTCAGCCGG
TCCCGGTTGCTATTGGAGGTCCCGGTCTTCACCCTGGTGTGAAATTCCGGTCTGACATTCAGACCCCTGGGCTCGCCAAT
GTTGCTGCAACCGTAATGAACTTCCATGGTTTCGAGGCTCCTGCTGACTACGAACCAACCCTCATTGAAGTTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4899.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis