Browse Element(s) Details


Os.42186.1.S1_at

Description gb:NM_191086.1
DB_XREF= gi:34909255
GEN=B1148D12.16
TID=Os.42186.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1148D12.16 (B1148D12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1148D12.16 (B1148D12.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6017011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60120Os.8845.1.S1_at11/111+35102974..35107712expressed protein
LOC_Os01g60130OsAffx.11673.2.S1_at11/111+35112250..35113259hypothetical protein
LOC_Os01g60130OsAffx.11673.1.S1_at3/111+35112250..35113259hypothetical protein
LOC_Os01g60140OsAffx.23869.1.S1_at11/111+35115389..35118260cation/hydrogen exchanger, putative, expressed
LOC_Os01g60150NANA1+35123100..35123507hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_x_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60160OsAffx.11674.1.S1_at11/111+35127306..35127677hypothetical protein
LOC_Os01g60170Os.42186.1.S1_at11/111+35128008..35128880expressed protein
LOC_Os01g60180NANA1+35130341..35130895hypothetical protein
LOC_Os01g60190Os.4899.1.S1_a_at11/111+35131159..351349052,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
LOC_Os01g60200Os.6496.1.S1_a_at11/111+35135032..35139051expressed protein
LOC_Os01g60210NANA1+35149827..35150159transposon protein, putative, unclassified
LOC_Os01g60220NANA1+35150794..35156949transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42186.1.S1_at--603--7611Chr01:35128314..35128338 (25 bp)
GGGAACCTGGCGTACCGCGTCGACA
LOC_Os01g60170
Os.42186.1.S1_at--41--4151Chr01:35128329..35128353 (25 bp)
CGCGTCGACAGCTACGACACGGAGA
LOC_Os01g60170
Os.42186.1.S1_at--1037--3631Chr01:35128397..35128421 (25 bp)
CTTCACCGTCCGCAGGAAGAGGCAG
LOC_Os01g60170
Os.42186.1.S1_at--378--7511Chr01:35128587..35128611 (25 bp)
GTGGAGGGATCGTACGCGCGGCGGT
LOC_Os01g60170
Os.42186.1.S1_at--182--4671Chr01:35128607..35128631 (25 bp)
GCGGTGCTGCGTGGTGTACGACGGC
LOC_Os01g60170
Os.42186.1.S1_at--327--7971Chr01:35128664..35128688 (25 bp)
GGAGGCGGTCGGCACTGACGTGTTC
LOC_Os01g60170
Os.42186.1.S1_at--666--1911Chr01:35128681..35128705 (25 bp)
ACGTGTTCCGGCTTGTTGTGCAGCC
LOC_Os01g60170
Os.42186.1.S1_at--708--9351Chr01:35128747..35128771 (25 bp)
TCGACCAGATGTTCGGGAGGCCGTC
LOC_Os01g60170
Os.42186.1.S1_at--1051--10611Chr01:35128758..35128782 (25 bp)
TTCGGGAGGCCGTCTCTCCTGAGGA
LOC_Os01g60170
Os.42186.1.S1_at--964--8411Chr01:35128765..35128789 (25 bp)
GGCCGTCTCTCCTGAGGAGCTGGTC
LOC_Os01g60170
Os.42186.1.S1_at--1068--6171Chr01:35128778..35128802 (25 bp)
GAGGAGCTGGTCCTCGTAGACCTCT
LOC_Os01g60170
Target Sequence 
GGGAACCTGGCGTACCGCGTCGACAGCTACGACACGGAGAGCGGCGACGAGGTCGTCCTCATGGACGCCGCCGGCGCCCC
GGCCTTCACCGTCCGCAGGAAGAGGCAGCTCAGCCTGCAGGGGGAGCAGTGGCTCGTGTTCGCCGGCGAGGCGGACGGCC
GGCGGCCGCCCGTGTACGCGGTCAGGCGGACGGNCCGCGGCGNCGGCAAGTCGCTGGCGCGCGNGACGCCGNGCGCGGGC
GCGNCNNCGGCCGGCGCGTCGGCGGCGTACGAGGTGGAGGGATCGTACGCGCGGCGGTGCTGCGTGGTGTACGACGGCGA
GAGGCNGGGCNGGTGGCNGGAGGTCCGGCCCAAGGAGGCGGTCGGCACTGACGTGTTCCGGCTTGTTGTGCAGCCCGGCG
TCGGCGTGTCGCTCGCCATGGCCGTCGTGGTGGCGCTCGACCAGATGTTCGGGAGGCCGTCTCTCCTGAGGAGCTGGTCC
TCGTAGACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis