Browse Element(s) Details


Os.34199.1.S1_at

Description gb:AK072478.1
DB_XREF= gi:32982501
TID=Os.34199.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.2 (OJ1294_F06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126N13, full insert sequence.
FL= gb:AK072478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72600OsAffx.2464.1.S1_at11/111+42449501..42450490Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34199.1.S1_at--225--5591Chr01:42469441..42469460 (20 bp)
GAAATGATTCCAAAACCACAGACTT
LOC_Os01g72630
Os.34199.1.S1_at--1140--2111Chr01:42469453..42469477 (25 bp)
ACAGACTTATTTGGATTACGCCAGA
LOC_Os01g72630
Os.34199.1.S1_at--52--10251Chr01:42469507..42469629 (25 bp)
TTTGATTACCAAAAGCAGAGGACCA
LOC_Os01g72630
Os.34199.1.S1_at--956--6191Chr01:42469683..42469707 (25 bp)
GAGGCAATGCATGCCATGGACAACT
LOC_Os01g72630
Os.34199.1.S1_at--556--8511Chr01:42469699..42469723 (25 bp)
TGGACAACTAAGCAAATGGCGGCTG
LOC_Os01g72630
Os.34199.1.S1_at--150--871Chr01:42469714..42469738 (25 bp)
ATGGCGGCTGAAATCTTTTTGAGTA
LOC_Os01g72630
Os.34199.1.S1_at--512--1411Chr01:42469753..42469777 (25 bp)
AGAAAGGATATTGGCGCTACGGTTT
LOC_Os01g72630
Os.34199.1.S1_at--1--8471Chr01:42469764..42469788 (25 bp)
TGGCGCTACGGTTTATTATCAAATT
LOC_Os01g72630
Os.34199.1.S1_at--376--6051Chr01:42469810..42469834 (25 bp)
GAGATATGATACTTTTATCCCGTGT
LOC_Os01g72630
Os.34199.1.S1_at--584--10351Chr01:42469823..42469847 (25 bp)
TTTATCCCGTGTTACACTGGGCAAC
LOC_Os01g72630
Os.34199.1.S1_at--184--8651Chr01:42469840..42469864 (25 bp)
TGGGCAACCCTATTACAGTGTAATG
LOC_Os01g72630
Target Sequence 
GAAATGATTCCAAAACCACAGACTTATTTGGATTACGCCAGAAACAAGATAAAAATCGCAGAAGATATCGGTTTGATTAC
CAAAAGCAGAGGACCAGAGCCAAGAACCTAGAAGGTCACTGCACAACACAGCCCAGGGGAGACAATAGCGAGGCAATGCA
TGCCATGGACAACTAAGCAAATGGCGGCTGAAATCTTTTTGAGTATATTATTAGTAATAAGAAAGGATATTGGCGCTACG
GTTTATTATCAAATTTCTTATTTATTATCTTCTGTTGAGATATGATACTTTTATCCCGTGTTACACTGGGCAACCCTATT
ACAGTGTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis