Browse Element(s) Details


Os.34199.2.S1_s_at

Description gb:NM_189319.1
DB_XREF= gi:34905721
GEN=OJ1294_F06.2
TID=Os.34199.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1294_F06.2 (OJ1294_F06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1294_F06.2 (OJ1294_F06.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72600OsAffx.2464.1.S1_at11/111+42449501..42450490Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein
LOC_Os01g72670Os.38326.1.A1_a_at11/111+42489440..42493310expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34199.2.S1_s_at--1103--8632Chr01:42467749..42467773 (25 bp)
TGGGATCAATACCACTCAAATTATA
LOC_Os01g72630
Os.34199.2.S1_s_at--30--6032Chr01:42467782..42467806 (25 bp)
GAGAGTGATCTAGCATATGTCAAAT
LOC_Os01g72630
Os.34199.2.S1_s_at--512--732Chr01:42467798..42467822 (25 bp)
ATGTCAAATTCTGTGAAGAGCTAGC
LOC_Os01g72630
Os.34199.2.S1_s_at--1085--1252Chr01:42467923..42467947 (25 bp)
AGATTATTTGGTACTCATTGCTGTT
LOC_Os01g72630
Os.34199.2.S1_s_at--988--8992Chr01:42468090..42468114 (25 bp)
TGAAGATCGCACTACGCATTCGTGT
LOC_Os01g72630
Os.34199.2.S1_s_at--98--3732Chr01:42468101..42468125 (25 bp)
CTACGCATTCGTGTTGTTTCTCTAA
LOC_Os01g72630
Os.34199.2.S1_s_at--943--3592Chr01:42468106..42468130 (25 bp)
CATTCGTGTTGTTTCTCTAATGCAA
LOC_Os01g72630
Os.34199.2.S1_s_at--470--8052Chr01:42468236..42468260 (25 bp)
GGAGCATGCGGTTTGATTGTTGTAA
LOC_Os01g72630
Os.34199.2.S1_s_at--249--10272Chr01:42468271..42468295 (25 bp)
TTTGATGGTGTGTATTTTGAGGTTT
LOC_Os01g72630
Os.34199.2.S1_s_at--1021--1452Chr01:42468470..42468494 (25 bp)
AGAAGATATGTTTCCCTTGCGCAAT
LOC_Os01g72630
Os.34199.2.S1_s_at--220--6852Chr01:42468479..42468503 (25 bp)
GTTTCCCTTGCGCAATGTTGATATT
LOC_Os01g72630
Target Sequence 
TGGGATCAATACCACTCAAATTATAGTACCTATGAGAGTGATCTAGCATATGTCAAATTCTGTGAAGAGCTAGCACATAA
GACTAAGTGGTTTCAAGATTATTTGGTACTCATTGCTGTTGAGGATAAGATAACCATGGGTCAGTGGGACAAAGTTAAAA
ATACAGTTTACCTTCAAGCAATGAAGATCGCACTACGCATTCGTGTTGTTTCTCTAATGCAAGTTATGACTGCTTTCCAG
GAATATATATGGAGCATGCGGTTTGATTGTTGTAACTACAAGGATTTTGATGGTGTGTATTTTGAGGTTTGGAAGCGGGT
TGCTAAGCAGAAGATGGAATTCACTGATGCCCTGTCAGAACTTTATAGAGAAGATATGTTTCCCTTGCGCAATGTTGATA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34199.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis