Browse Element(s) Details


Os.3420.1.S1_s_at

Description gb:AB047313.1
DB_XREF= gi:30409355
GEN=OsRAc1
TID=Os.3420.1
CNT=45
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.3420 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRAc1 mRNA for actin, complete cds.
PROD=actin
FL= gb:AK100267.1 gb:AK058421.1 gb:AB047313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5089011/11Actin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50860Os.51112.1.S1_at11/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50860OsAffx.5571.1.S1_at7/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50870Os.16884.1.S1_at10/113+29014165..29016831expressed protein
LOC_Os03g50880Os.11814.1.S1_at9/113+29016928..29020662Anthranilate synthase component II, putative, expressed
LOC_Os03g50890Os.3420.1.S1_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50890Os.3420.1.S1_s_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50900Os.51810.1.S1_at11/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50900Os.19803.2.S1_at1/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50920OsAffx.13451.1.S1_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50920OsAffx.13451.1.S1_x_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50940Os.24044.1.S1_at9/113+29051234..29054086Cytochrome c oxidase assembly protein ctaG, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3420.1.S1_s_at--788--10191Chr03:29025794..29025818 (25 bp)
TATATGGCAACATCGTTCTCAGTGG
LOC_Os03g50890
Os.3420.1.S1_s_at--949--7491Chr03:29025818..29025842 (25 bp)
GTGGTACCACTATGTTCCCTGGCAT
LOC_Os03g50890
Os.3420.1.S1_s_at--654--8571Chr03:29025902..29025926 (25 bp)
TGGTCGCCCCTCCTGAAAGGAAGTA
LOC_Os03g50890
Os.3420.1.S1_s_at--315--7931Chr03:29025935..29025959 (25 bp)
GGATTGGAGGATCCATCTTGGCATC
LOC_Os03g50890
Os.3420.1.S1_s_at--97--611Chr03:29026116..29026140 (25 bp)
ATGCTTCTAATTCTTCGGACCCAAG
LOC_Os03g50890
Os.3420.1.S1_s_at--1141--9431Chr03:29026130..29026154 (25 bp)
TCGGACCCAAGAATGCTAAGCCAAG
LOC_Os03g50890
Os.3420.1.S1_s_at--543--4391Chr03:29026149..29026173 (25 bp)
GCCAAGAGGAGCTGTTATCGCCGTC
LOC_Os03g50890
Os.3420.1.S1_s_at--998--8491Chr03:29026218..29026242 (25 bp)
TGGACAAAGTTTTCAACCGGCCTAT
LOC_Os03g50890
Os.3420.1.S1_s_at--832--2611Chr03:29026232..29026256 (25 bp)
AACCGGCCTATCTGTTATCATTTTC
LOC_Os03g50890
Os.3420.1.S1_s_at--1086--3871Chr03:29026270..29026294 (25 bp)
CTGTAATACCTATTGCTACCTGTGG
LOC_Os03g50890
Os.3420.1.S1_s_at--40--3731Chr03:29026285..29026309 (25 bp)
CTACCTGTGGTTCTCACTTGTGATT
LOC_Os03g50890
Target Sequence 
TATATGGCAACATCGTTCTCAGTGGTGGTACCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCC
TTGGCTCCTAGCAGCATGAAGATCAAGGTGGTCGCCCCTCCTGAAAGGAAGTACAGTGTCTGGATTGGAGGATCCATCTT
GGCATCTCTCAGCACATTCCAGCAGATGTGGATTGCCAAGGCTGAGTACGACGAGTCTGGCCCATCCATTGTGCACAGGA
AATGCTTCTAATTCTTCGGACCCAAGAATGCTAAGCCAAGAGGAGCTGTTATCGCCGTCCTCCTGCTTGTTTCTCTCTTT
TTGTTGCTGTTTCTTCATTAGCGTGGACAAAGTTTTCAACCGGCCTATCTGTTATCATTTTCTTCTATTCAAAGACTGTA
ATACCTATTGCTACCTGTGGTTCTCACTTGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3420.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis