Browse Element(s) Details


Os.34739.2.S1_at

Description gb:NM_189570.1
DB_XREF= gi:34906223
GEN=P0666G04.18
TID=Os.34739.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0666G04.18 (P0666G04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0666G04.18 (P0666G04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g086801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08630OsAffx.21914.1.S1_at11/111+4294733..4299183expressed protein
LOC_Os01g08630OsAffx.21914.2.S1_at9/111+4294733..4299183expressed protein
LOC_Os01g08640NANA1+4301587..4301969transposon protein, putative, unclassified
LOC_Os01g08650Os.37600.1.S1_at10/111+4303684..4306737expressed protein
LOC_Os01g08660Os.7545.1.S1_a_at11/111+4310471..4312614Major intrinsic protein, expressed
LOC_Os01g08670Os.51447.1.S1_s_at11/111+4314803..4315582expressed protein
LOC_Os01g08680Os.34739.1.S1_a_at11/111+4319529..4323144expressed protein
LOC_Os01g08680Os.34739.2.S1_at1/111+4319529..4323144expressed protein
LOC_Os01g08690OsAffx.10970.1.S1_at9/111+4323380..4325632holocarboxylase synthetase, putative, expressed
LOC_Os01g08700Os.7987.1.S1_at11/111+4326162..4335288GIGANTEA protein, putative, expressed
LOC_Os01g08710Os.55762.1.S1_at11/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710Os.30505.1.S1_at10/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_x_at9/111+4337651..4353270WRKY DNA binding domain containing protein, expressed
LOC_Os01g08710OsAffx.23164.1.S1_at8/111+4337651..4353270WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34739.2.S1_at--898--491Chr01:4320149..4320173 (25 bp)
ATCGGCTTGTCTCTGCAGCAATGTT
LOC_Os01g08680
Os.34739.2.S1_at--1034--4711Chr01:4319111..4319135 (25 bp)
GCTGGATTCGATACTGCGGCTTCAT
NONE
Os.34739.2.S1_at--969--9611Chr01:4319090..4319114 (25 bp)
TCATCCTGATGTTAGTTTCGCCAGT
NONE
Os.34739.2.S1_at--826--6271Chr01:4318741..4318765 (25 bp)
GATGTACCTGTCGAGATGCCCATGA
NONE
Os.34739.2.S1_at--39--631Chr01:4318707..4318731 (25 bp)
ATGCTGCTTCAGTTTTTCGGAGGTG
NONE
Os.34739.2.S1_at--591--2931Chr01:4318105..4318129 (25 bp)
AAGGCTTTTGTGCAGATCCATGGAC
NONE
Os.34739.2.S1_at--296--831Chr01:4318086..4318110 (25 bp)
ATGGACCTGGTTCGCTTTGTTTGAC
NONE
Os.34739.2.S1_at--1066--4871Chr01:4318073..4318097 (25 bp)
GCTTTGTTTGACCATCTGATTCTTT
NONE
Os.34739.2.S1_at--397--5151Chr01:4317986..4318010 (25 bp)
GCAACTTGCCTGGAGATCTGCATGC
NONE
Os.34739.2.S1_at--493--8791Chr01:4317903..4317927 (25 bp)
TGTTACTCTATCTTGTGCAGCTGCT
NONE
Os.34739.2.S1_at--820--7291Chr01:4317870..4317894 (25 bp)
GTGCCCTTCACATATTCACACATGG
NONE
Target Sequence 
ATCGGCTTGTCTCTGCAGCAATGTTCTACTGAAGATAGAAGAGAGGAACCGAACCCTCAGGCATCACTCTTGGCCAATGA
TGACAATAATGTGAAGCCAGACATCCCAGTGGTACTGATGGTTAAGAGTTGCTGGATTCGATACTGCGGCTTCATCCTGA
TGTTAGTTTCGCCAGTGACTGGTAGGCGATGTACCTGTCGAGATGCCCATGATCTCAAGATATGCTGCTTCAGTTTTTCG
GAGGTGTTCAAAGGGATAGAATGTGCATGTCAAAGAAGTTTGAAAGGCTTTTGTGCAGATCCATGGACCTGGTTCGCTTT
GTTTGACCATCTGATTCTTTCATTTATTGGATATGCATGCAGAGACAGAATCAATTTCAAAGAGAGTGATGCAATGTACG
CAGCAACTTGCCTGGAGATCTGCATGCAACATGCTGATATCAATAGTCAAATTCGGTGTTCTGAACAACTATGGCTAATT
AATACTGTTACTCTATCTTGTGCAGCTGCTGCCTGCTGGTGCCCTTCACATATTCACACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34739.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis