Browse Element(s) Details


Os.34745.1.A1_at

Description gb:AK070308.1
DB_XREF= gi:32980332
TID=Os.34745.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049A10, full insert sequence.
FL= gb:AK070308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4352011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43470Os.5176.1.S1_at10/115+25184696..25189013chloroplast outer membrane protein, putative, expressed
LOC_Os05g43480Os.10062.1.S1_at10/115+25191183..25196932Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490Os.18454.2.S1_a_at11/115+25199902..25203459F-box family protein, putative, expressed
LOC_Os05g43510OsAffx.15086.1.S1_at11/115+25208048..25209745Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed
LOC_Os05g43530OsAffx.20285.2.S1_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530Os.15705.1.S1_x_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530OsAffx.20285.1.S1_x_at1/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43540Os.10504.1.S1_at11/115+25229534..25233108expressed protein
LOC_Os05g43550OsAffx.27292.1.S1_at11/115+25233838..25235136Eukaryotic aspartyl protease family protein
LOC_Os05g43560Os.17049.1.S1_at11/115+25238156..25247656expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34745.1.A1_at--1151--5831Chr05:25215353..25215377 (25 bp)
GAGCCCAAAATTCATTCCGAGACTG
LOC_Os05g43520
Os.34745.1.A1_at--29--10091Chr05:25215537..25215561 (25 bp)
TAGGCGGGCTCAAGGTATGGTCCCA
LOC_Os05g43520
Os.34745.1.A1_at--547--7351Chr05:25215570..25215594 (25 bp)
GTGCAATCATCACTTTCCGACAGTC
LOC_Os05g43520
Os.34745.1.A1_at--903--5651Chr05:25215588..25215612 (25 bp)
GACAGTCCCATAAGCACATGCTGGC
LOC_Os05g43520
Os.34745.1.A1_at--529--9131Chr05:25215606..25215630 (25 bp)
TGCTGGCTTCATTTCAGTAGCGGCA
LOC_Os05g43520
Os.34745.1.A1_at--895--2391Chr05:25215690..25215714 (25 bp)
AAACTTGCTCAGTCTGGGATACCCT
LOC_Os05g43520
Os.34745.1.A1_at--754--7651Chr05:25215705..25215729 (25 bp)
GGGATACCCTGCTTAGAGCCGTAAT
LOC_Os05g43520
Os.34745.1.A1_at--328--8231Chr05:25215735..25215759 (25 bp)
GGCAATGCCTCAGCTCGTGTTAATG
LOC_Os05g43520
Os.34745.1.A1_at--603--8771Chr05:25215777..25215801 (25 bp)
TGTATTATTGACCTCTCTGCCTGTA
LOC_Os05g43520
Os.34745.1.A1_at--846--9471Chr05:25215792..25215816 (25 bp)
TCTGCCTGTACATAGAGCCCTCTGG
LOC_Os05g43520
Os.34745.1.A1_at--926--6991Chr05:25215837..25215861 (25 bp)
GTACGTACTACAACCACTGTGTTTG
LOC_Os05g43520
Target Sequence 
GAGCCCAAAATTCATTCCGAGACTGATGAAGATGAAGTTNATGAATGGCCTGATGATGNCGACGATGCAGAAGAGGTGGT
TGGCACAGAAGGTAACAGAACTTCACTGGGACAGGAGGAAGATGTATCGTTCAGTGATCTGGAGGATGACGATGACGATG
GCAATAAAGGGATAGCGAAGTAGCTAGGCGGGCTCAAGGTATGGTCCCAGACTCCCAGTGCAATCATCACTTTCCGACAG
TCCCATAAGCACATGCTGGCTTCATTTCAGTAGCGGCAGATACGCATTAAGGGATCATTACTTTGTTATTATTAGGCCCA
TGAAGTGATGAACCCCCAAACTTGCTCAGTCTGGGATACCCTGCTTAGAGCCGTAATGATAGGGCAATGCCTCAGCTCGT
GTTAATGCTGATGGCGACTACATCTGTATTATTGACCTCTCTGCCTGTACATAGAGCCCTCTGGGCNTGCTGTTATAACC
CAAGGTACGTACTACAACCACTGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34745.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis