Browse Element(s) Details


Os.34767.2.S1_s_at

Description gb:NM_187613.1
DB_XREF= gi:34902311
GEN=OSJNBa0081P02.21
TID=Os.34767.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34767 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OSJNBa0081P02.21), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1253011/11Metal tolerance protein C3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34767.2.S1_s_at--433--651Chr03:6619474..6619498 (25 bp)
ATGCAGTGTCACTAGTGGGTGAATC
LOC_Os03g12530
Os.34767.2.S1_s_at--944--10071Chr03:6619486..6619510 (25 bp)
TAGTGGGTGAATCAGCTCCGCCAGA
LOC_Os03g12530
Os.34767.2.S1_s_at--741--7751Chr03:6619491..6619515 (25 bp)
GGTGAATCAGCTCCGCCAGAAATGC
LOC_Os03g12530
Os.34767.2.S1_s_at--247--5351Chr03:6619520..6619544 (25 bp)
GAAGTTGACATATTTGGCCATCAGA
LOC_Os03g12530
Os.34767.2.S1_s_at--948--8451Chr03:6619534..6619558 (25 bp)
TGGCCATCAGACATCATCCTCAAAT
LOC_Os03g12530
Os.34767.2.S1_s_at--465--7211Chr03:6619566..6619590 (25 bp)
GTCGATACAGTTCGAGCATACACCT
LOC_Os03g12530
Os.34767.2.S1_s_at--436--8911Chr03:6619717..6619741 (25 bp)
TGAGCTGCCAGAGGAATTGCCCCTT
LOC_Os03g12530
Os.34767.2.S1_s_at--200--8251Chr03:6619747..6619771 (25 bp)
GGCACATGCTATTGGAGAATCACTT
LOC_Os03g12530
Os.34767.2.S1_s_at--742--2791Chr03:6619778..6619802 (25 bp)
AAGATCGAGGAGCTCCCAGAAGTCG
LOC_Os03g12530
Os.34767.2.S1_s_at--854--1131Chr03:6619798..6619822 (25 bp)
AGTCGAGCGGGCATTTGTTCACCTT
LOC_Os03g12530
Os.34767.2.S1_s_at--307--4951Chr03:6619808..6619832 (25 bp)
GCATTTGTTCACCTTGATTTCGAGT
LOC_Os03g12530
Target Sequence 
ATGCAGTGTCACTAGTGGGTGAATCAGCTCCGCCAGAAATGCTGCAGAAGTTGACATATTTGGCCATCAGACATCATCCT
CAAATCAAGCGTGTCGATACAGTTCGAGCATACACCTTTGGGGTTCTTTACTTTGTTGAGGTTGACATTGAGCTGCCAGA
GGAATTGCCCCTTAAGGAGGCACATGCTATTGGAGAATCACTTCAAATAAAGATCGAGGAGCTCCCAGAAGTCGAGCGGG
CATTTGTTCACCTTGATTTCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34767.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis