Browse Element(s) Details


Os.34805.1.S1_at

Description gb:AK070080.1
DB_XREF= gi:32980104
TID=Os.34805.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane-associated salt-inducible protein (OSJNBa0004B24.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045J04, full insert sequence.
FL= gb:AK070080.1 gb:AK120873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3726011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37210OsAffx.20517.2.S1_x_at1/113+20575095..20582165retrotransposon protein, putative, unclassified
LOC_Os03g37230NANA3+20584628..20586451hypothetical protein
LOC_Os03g37234NANA3+20589416..20590046retrotransposon, putative, centromere-specific
LOC_Os03g37240OsAffx.20354.1.S1_at1/113+20593339..20596268retrotransposon protein, putative, unclassified
LOC_Os03g37250OsAffx.13026.1.S1_at1/113+20596799..20604279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g37260Os.34805.1.S1_at11/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37260Os.34805.2.S1_x_at7/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37270Os.2708.3.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.1.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_x_at10/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37290Os.27940.1.S1_at11/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37290Os.50043.1.A1_at1/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34805.1.S1_at--492--7391Chr03:20607437..20607461 (25 bp)
GTGAGTTTGTTGCTTTTGTGCCCAA
LOC_Os03g37260
Os.34805.1.S1_at--670--10811Chr03:20607452..20607476 (25 bp)
TTGTGCCCAAACTTCATGCTGGTTG
LOC_Os03g37260
Os.34805.1.S1_at--940--611Chr03:20607467..20607491 (25 bp)
ATGCTGGTTGTTTTGGCCATGCCAT
LOC_Os03g37260
Os.34805.1.S1_at--580--3551Chr03:20607496..20607520 (25 bp)
CATCTCTAGGTATCAGCTCTCCTTT
LOC_Os03g37260
Os.34805.1.S1_at--874--4811Chr03:20607511..20607535 (25 bp)
GCTCTCCTTTCTTCTGGGATGAGGT
LOC_Os03g37260
Os.34805.1.S1_at--903--4411Chr03:20607661..20607685 (25 bp)
GCCAGTGACAATCGTGAGTTCTCCA
LOC_Os03g37260
Os.34805.1.S1_at--845--9491Chr03:20607680..20607704 (25 bp)
TCTCCAATACTTCTCCTTATTCTTG
LOC_Os03g37260
Os.34805.1.S1_at--821--10411Chr03:20607696..20607720 (25 bp)
TTATTCTTGCCTCACTGTATTGTCC
LOC_Os03g37260
Os.34805.1.S1_at--506--6871Chr03:20607712..20607736 (25 bp)
GTATTGTCCGTACTTGTTTTGTCGA
LOC_Os03g37260
Os.34805.1.S1_at--961--1171Chr03:20607765..20607789 (25 bp)
AGTACTTGTGGCTTCTGTCTGTCTC
LOC_Os03g37260
Os.34805.1.S1_at--227--8731Chr03:20607780..20607804 (25 bp)
TGTCTGTCTCAGAAGTGCACTAGTT
LOC_Os03g37260
Target Sequence 
GTGAGTTTGTTGCTTTTGTGCCCAAACTTCATGCTGGTTGTTTTGGCCATGCCATCCTCCATCTCTAGGTATCAGCTCTC
CTTTCTTCTGGGATGAGGTGAAAAGCAATTCCTCACCCATTTCCTTTCCTCCTCCTGGTTCTGGACTGCTGGTTTGATGG
AAGTAGTAGCTGCTGCAGCAGCAGTTTGCAGTGTGCTCAACATATCAGGCTATGAGGCTTCCGTGCCAGTGACAATCGTG
AGTTCTCCAATACTTCTCCTTATTCTTGCCTCACTGTATTGTCCGTACTTGTTTTGTCGACAAAGGGATTTGCATGAATT
ATATACACAGTACTTGTGGCTTCTGTCTGTCTCAGAAGTGCACTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis