Browse Element(s) Details


Os.34805.2.S1_x_at

Description gb:NM_184784.1
DB_XREF= gi:34896657
GEN=OSJNBa0004B24.22
TID=Os.34805.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34805 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative membrane-associated salt-inducible protein (OSJNBa0004B24.22), mRNA.
PROD=putative membrane-associated salt-inducibleprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g372607/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37210OsAffx.20517.2.S1_x_at1/113+20575095..20582165retrotransposon protein, putative, unclassified
LOC_Os03g37230NANA3+20584628..20586451hypothetical protein
LOC_Os03g37234NANA3+20589416..20590046retrotransposon, putative, centromere-specific
LOC_Os03g37240OsAffx.20354.1.S1_at1/113+20593339..20596268retrotransposon protein, putative, unclassified
LOC_Os03g37250OsAffx.13026.1.S1_at1/113+20596799..20604279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g37260Os.34805.1.S1_at11/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37260Os.34805.2.S1_x_at7/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37270Os.2708.3.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.1.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_x_at10/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37290Os.27940.1.S1_at11/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37290Os.50043.1.A1_at1/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34805.2.S1_x_at--114--4011Chr03:20606701..20606725 (25 bp)
CGTGCTATCGATTTCTTTGCTTATA
LOC_Os03g37260
Os.34805.2.S1_x_at--273--7991Chr03:20606737..20606761 (25 bp)
GGATGCATGCCCAATGAATCTACCT
LOC_Os03g37260
Os.34805.2.S1_x_at--421--5251Chr03:20606752..20606776 (25 bp)
GAATCTACCTACACTATGCTTATTA
LOC_Os03g37260
Os.34805.2.S1_x_at--370--8971Chr03:20607535..20607559 (25 bp)
TGAAAAGCAATTCCTCACCCATTTC
LOC_Os03g37260
Os.34805.2.S1_x_at--602--4271Chr03:20607570..20607594 (25 bp)
CCTGGTTCTGGACTGCTGGTTTGAT
LOC_Os03g37260
Os.34805.2.S1_x_at--1062--9031Chr03:20607623..20607647 (25 bp)
TGCAGTGTGCTCAACATATCAGGCT
LOC_Os03g37260
Os.34805.2.S1_x_at--221--251Chr03:20607638..20607662 (25 bp)
ATATCAGGCTATGAGGCTTCCGTGC
LOC_Os03g37260
Os.34805.2.S1_x_at--1105--7271Chr03:20607659..20608017 (25 bp)
GTGCCAGTGACAATCTCAGTGCAAT
NONE
Os.34805.2.S1_x_at--585--9011Chr03:20608012..20608036 (25 bp)
TGCAATTCTCTGATGTAGCCACTGA
NONE
Os.34805.2.S1_x_at--190--6971Chr03:20608026..20608050 (25 bp)
GTAGCCACTGAGAACGAGTACTTTG
NONE
Os.34805.2.S1_x_at--479--6091Chr03:20608041..20608065 (25 bp)
GAGTACTTTGTTACTTTCTCTCTGG
NONE
Target Sequence 
CGTGCTATCGATTTCTTTGCTTATATGGTGTCAAATGGATGCATGCCCAATGAATCTACCTACACTATGCTTATTAAGGG
TTTAGCTAGCGAGGGATTAGCAAAGGAGGCTCAAGAGTTGCTGAGCGAGTTGTGCTCTAGGGGAGCTCTAAGGAAGCACT
TGATGAGGCATTTTGGAATTAGCAATTGTACTCAAGAAAATGGAAAGCAGAAATGCGAAGAGAATCTGACTAGTGCAGTA
GATAATAATTACAAACTTCCCATTGAAATATTGGGCTTTTTGGAGATTCAGAATTTAAGGCCAGGTGAAAAGCAATTCCT
CACCCATTTCCTTTCCTCCTCCTGGTTCTGGACTGCTGGTTTGATGGAAGTAGTAGCTGCTGCAGCAGCAGTTTGCAGTG
TGCTCAACATATCAGGCTATGAGGCTTCCGTGCCAGTGACAATCTCAGTGCAATTCTCTGATGTAGCCACTGAGAACGAG
TACTTTGTTACTTTCTCTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34805.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis