Browse Element(s) Details


Os.35046.2.S1_x_at

Description gb:NM_187961.1
DB_XREF= gi:34903005
TID=Os.35046.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0407411/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g1569011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g224301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04050Os.27408.1.S2_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04050Os.27408.1.S1_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04060OsAffx.30270.1.S1_at11/1110+1855157..1859683NB-ARC domain containing protein
LOC_Os10g04074Os.35046.2.S1_x_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.35046.1.S1_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.14086.1.S1_s_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.46478.1.S1_at10/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04090Os.46735.1.S1_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_s_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_x_at6/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35046.2.S1_x_at--321--6052Chr10:1867939..1867963 (25 bp)
GAGATACATTGCAGGTACTCTTGAT
LOC_Os10g04074
Os.35046.2.S1_x_at--427--9912Chr10:1867954..1867978 (25 bp)
TACTCTTGATGTTGGCTGCTGGTTT
LOC_Os10g04074
Os.35046.2.S1_x_at--702--5653Chr10:1868087..1868111 (25 bp)
GACAGTTTGATCAGCTGGCAATCTC
LOC_Os10g04074
Os.35046.2.S1_x_at--720--1052Chr10:1868121..1868145 (25 bp)
AGGTGGTAGCTTTGTCGTCATGTGA
LOC_Os10g04074
Os.35046.2.S1_x_at--647--9112Chr10:1868158..1868182 (25 bp)
TGCTGCTACTACTGGTGCTTGTCAA
LOC_Os10g04074
Os.35046.2.S1_x_at--483--9072Chr10:1868173..1868197 (25 bp)
TGCTTGTCAAGGGATTTGGCTCAAT
LOC_Os10g04074
Os.35046.2.S1_x_at--866--4852Chr10:1868210..1868234 (25 bp)
GAATTACTTGGAGAGGACCCTGGCC
LOC_Os10g04074
Os.35046.2.S1_x_at--156--3092Chr10:1868266..1868290 (25 bp)
AATCAATCTCTGCAAGAATCCGGTA
LOC_Os10g04074
Os.35046.2.S1_x_at--841--5252Chr10:1868281..1868305 (25 bp)
GAATCCGGTACTCCATGATCGAAGT
LOC_Os10g04074
Os.35046.2.S1_x_at--1007--7052Chr10:1868304..1868328 (25 bp)
GTAAGCACATTGACACTCGATTTCA
LOC_Os10g04074
Os.35046.2.S1_x_at--1099--232Chr10:1868400..1868424 (25 bp)
ATATACTGACTAAGCCTGTTGGACG
LOC_Os10g04074
Target Sequence 
GAGATACATTGCAGGTACTCTTGATGTTGGCTGCTGGTTTGGGAGAAGGGAAAAGGGTGAACTCAGATTGATTGGGTTCA
GTGACAGTGATATGGCTGGGGATTTGGATGATAGGAAGAGCACCACAGGTGTACTGTATATGCTGGGAGACAGTTTGATC
AGCTGGCAATCTCAGAAACAAAAGGTGGTAGCTTTGTCGTCATGTGAAGCTGAGTATATTGCTGCTACTACTGGTGCTTG
TCAAGGGATTTGGCTCAATAGGCTATTGGCAGAATTACTTGGAGAGGACCCTGGCCAAACTGTGATGAAAGTTGATAACA
AATCAGCAATCAATCTCTGCAAGAATCCGGTACTCCATGATCGAAGTAAGCACATTGACACTCGATTTCATTTTATCAGG
GAGTGTGTGGAGAAGAAGCAAATCGCTGTGGAGTATGTGCGAACAGAAGATCAGCTTGCAGATATACTGACTAAGCCTGT
TGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35046.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis