Browse Element(s) Details


Os.46478.1.S1_at

Description gb:AK072920.1
DB_XREF= gi:32982943
TID=Os.46478.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0072F04.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146D21, full insert sequence.
FL= gb:AK072920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0407410/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04050Os.27408.1.S2_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04050Os.27408.1.S1_at11/1110+1842381..1850220transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04060OsAffx.30270.1.S1_at11/1110+1855157..1859683NB-ARC domain containing protein
LOC_Os10g04074Os.35046.2.S1_x_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.35046.1.S1_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.14086.1.S1_s_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.46478.1.S1_at10/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04090Os.46735.1.S1_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_s_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_x_at6/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46478.1.S1_at--292--191Chr10:1871326..1871350 (25 bp)
ATTTACTTGTCATCGACTTGTGGAC
LOC_Os10g04074
Os.46478.1.S1_at--748--5491Chr10:1871490..1871514 (25 bp)
GAACAGATTCATCGACGGCTTCGGC
LOC_Os10g04074
Os.46478.1.S1_at--478--6111Chr10:1871702..1871726 (25 bp)
GAGGGTTGTTAACAGAACCTTTATG
LOC_Os10g04074
Os.46478.1.S1_at--904--2631Chr10:1871717..1871741 (25 bp)
AACCTTTATGGTCGGCTGGCATTGC
LOC_Os10g04074
Os.46478.1.S1_at--629--4711Chr10:1871731..1871755 (25 bp)
GCTGGCATTGCTGGCTCACTGACAG
LOC_Os10g04074
Os.46478.1.S1_at--865--1971Chr10:1871748..1871772 (25 bp)
ACTGACAGCCAGGAATTGCATATTT
LOC_Os10g04074
Os.46478.1.S1_at--603--7691Chr10:1871783..1871807 (25 bp)
GGGTCCCTTAGCGTAGGATGTTTAG
LOC_Os10g04074
Os.46478.1.S1_at--4--6291Chr10:1871799..1871823 (25 bp)
GATGTTTAGGCTCTGCAATAGGAAA
LOC_Os10g04074
Os.46478.1.S1_at--1118--311Chr10:1871824..1871848 (25 bp)
ATAATACCTTAGTTTCACAATCGAA
LOC_Os10g04074
Os.46478.1.S1_at--224--2571Chr10:1871841..1871865 (25 bp)
CAATCGAAATTAACTGTACCCAGGG
LOC_Os10g04074
Os.46478.1.S1_at--154--2911Chr10:1871873..1871897 (25 bp)
AAGGAAATTCTGTCCTATTCAATTT
NONE
Target Sequence 
ATTTACTTGTCATCGACTTGTGGACAAGTCGAATTTCAAGGAGAGGAGATTGTCAGGAACCCATTGAGCTACACATGGGC
TGACTCAATTGCTAATCCATGCCAAGGCCCAAACAAACAAAGGAGATGAATACAAAAGGCAGTAGCAGGAGAACTTCAAG
CAACGAACAGATTCATCGACGGCTTCGGCCACGGCGGCGGCGGCGGCGGCTTGGTTCGGTTGAACCTCGTCGATCTCTAT
CTTTTTCTTACTCTCTCGTGTTCCTCTTCACTGCCACTTCTAGAAGCTTCCTCTACTTCTTCTCACTCAATTCCTCTTCT
ATTTTCTGAGATTGTATTGAACTCTATTGTTCTTGAGAATTCTGAGTTTGGAGGAAGAGGGTTGTTAACAGAACCTTTAT
GGTCGGCTGGCATTGCTGGCTCACTGACAGCCAGGAATTGCATATTTCCATGATTTGGGGTCCCTTAGCGTAGGATGTTT
AGGCTCTGCAATAGGAAAATAATACCTTAGTTTCACAATCGAAATTAACTGTACCCAGGGGAAAAAAAAGGAAATTCTGT
CCTATTCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis