Browse Element(s) Details


Os.35068.1.S1_at

Description gb:AK069104.1
DB_XREF= gi:32979128
TID=Os.35068.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.35068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007B17, full insert sequence.
FL= gb:AK069104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1877011/11Oxysterol-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18750OsAffx.2602.1.S1_at11/1112+10838903..10840765hypothetical protein
LOC_Os12g18750Os.5300.1.S1_at1/1112+10838903..10840765hypothetical protein
LOC_Os12g18760Os.7839.1.S1_at11/1112+10845644..10853690expressed protein
LOC_Os12g18770Os.35068.1.S1_at11/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18770Os.7268.1.S1_at1/1112+10859656..10869587Oxysterol-binding protein, expressed
LOC_Os12g18780OsAffx.2602.1.S1_at8/1112+10871779..10874766hypothetical protein
LOC_Os12g18780OsAffx.24341.1.S1_at7/1112+10871779..10874766hypothetical protein
LOC_Os12g18780Os.5300.1.S1_at1/1112+10871779..10874766hypothetical protein
LOC_Os12g18790OsAffx.19735.1.S1_at11/1112+10875919..10876454hypothetical protein
LOC_Os12g18800OsAffx.22702.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18800OsAffx.10473.1.S1_at1/1112+10882850..10885901transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g18810Os.52950.1.S1_at11/1112+10890652..10891472expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008202biological_processsteroid metabolism
GO:0008142molecular_functionoxysterol binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35068.1.S1_at--165--10431Chr12:10861173..10861197 (25 bp)
TTAGGCTTGAACAACTGCAGCGACA
LOC_Os12g18770
Os.35068.1.S1_at--521--1631Chr12:10860158..10860177 (20 bp)
AGCGACAGGCCCGAAGGTTACAAGA
LOC_Os12g18770
Os.35068.1.S1_at--1087--991Chr12:10860104..10860128 (25 bp)
AGGATGACGACGACAGCTACCGCTA
LOC_Os12g18770
Os.35068.1.S1_at--257--811Chr12:10860038..10860062 (25 bp)
ATGGGATTCCAGACATCTTCGGTCA
LOC_Os12g18770
Os.35068.1.S1_at--719--1771Chr12:10860001..10860025 (25 bp)
ACCTGGGTGGTCATAGCTTACCTAC
LOC_Os12g18770
Os.35068.1.S1_at--469--7431Chr12:10859965..10859989 (25 bp)
GTGTAGTGTAATCCCACATTTCTTT
LOC_Os12g18770
Os.35068.1.S1_at--65--2991Chr12:10859895..10859919 (25 bp)
AATGTCCATATGTGTGCCGATGTAC
LOC_Os12g18770
Os.35068.1.S1_at--774--10351Chr12:10859767..10859791 (25 bp)
TTTATTGTCGGCCAGAAGATGTCCT
LOC_Os12g18770
Os.35068.1.S1_at--501--6191Chr12:10859736..10859760 (25 bp)
GAGGCTACTCTTGTACATTTAAATT
LOC_Os12g18770
Os.35068.1.S1_at--1155--1851Chr12:10859701..10859725 (25 bp)
ACGAGTACTTGAGAGCTGTTTCCTG
LOC_Os12g18770
Os.35068.1.S1_at--1081--3851Chr12:10859686..10859710 (25 bp)
CTGTTTCCTGCTAGAACCTCAAGTA
LOC_Os12g18770
Target Sequence 
TTAGGCTTGAACAACTGCAGCGACAGGCCCGAAGGTTACAAGAGAAAGGATGGCAACCCAGGTGGTTTAGCAAGGATGAC
GACGACAGCTACCGCTACATTGGCGGTTACTGGGAAGCAAGGGAGAAGGGGAACTGGGATGGGATTCCAGACATCTTCGG
TCAGCGCAGCGCTTCACCTGGGTGGTCATAGCTTACCTACCCCCTCTCCCTGTGTAGTGTAATCCCACATTTCTTTACAG
AAAAAAAGTATGTTACCTTCTATATATACATATANNTTGAANGCAATGTCCATATGTGTGCCGATGTACTGGATTCAGAG
AGCCGAGATGTACTGGTAAAAACACGGCAAGATTACGTTAGTAGGAATTCGGACCCCAAGTAGGTTAGATTAATCCAAAG
TTTGAGTATAATTTTATTGTCGGCCAGAAGATGTCCTGGTTNTGAGGCTACTCTTGTACATTTAAATTTTCTCAACTCAC
GAGTACTTGAGAGCTGTTTCCTGCTAGAACCTCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis