Browse Element(s) Details


Os.35191.2.S1_x_at

Description gb:NM_184923.1
DB_XREF= gi:34896935
TID=Os.35191.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0010I09.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0070N04.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5662011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56566NANA3+32162585..32163992retrotransposon protein, putative, unclassified
LOC_Os03g56572NANA3+32164105..32168709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g56580Os.17090.1.S1_at11/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56580Os.51926.1.S1_x_at1/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56590Os.45014.1.S1_at8/113+32177135..32179764expressed protein
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein
LOC_Os03g56670Os.12283.1.S1_at11/113+32211866..32213110Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35191.2.S1_x_at--252--6511Chr03:32189387..32189411 (25 bp)
GATATGTCTATATCTCAGCGGACTC
LOC_Os03g56620
Os.35191.2.S1_x_at--1035--8591Chr03:32189979..32190003 (25 bp)
TGGTCGCATCGATTTAGGCACTTAT
LOC_Os03g56620
Os.35191.2.S1_x_at--1106--911Chr03:32189994..32190018 (25 bp)
AGGCACTTATGCTATTGCTGCTGTT
LOC_Os03g56620
Os.35191.2.S1_x_at--1157--3011Chr03:32190067..32190091 (25 bp)
AATGCCGTTCAGAAAACAGCTCCGA
LOC_Os03g56620
Os.35191.2.S1_x_at--301--7751Chr03:32190099..32190123 (25 bp)
GGTGTATACCGAACCTTATGACAAG
LOC_Os03g56620
Os.35191.2.S1_x_at--278--7991Chr03:32190123..32190147 (25 bp)
GGATGCATGCTTACTTGATTTTGAT
LOC_Os03g56620
Os.35191.2.S1_x_at--645--411Chr03:32190196..32190220 (25 bp)
ATCATGGTGTGGTTCAGGGCTTTCA
LOC_Os03g56620
Os.35191.2.S1_x_at--387--4891Chr03:32190214..32190237 (24 bp)
GCTTTCAGTCTAGCCAATCCAAGGG
LOC_Os03g56620
Os.35191.2.S1_x_at--245--8971Chr03:32190382..32190406 (25 bp)
TGACAATTATCTGAAGCTCCCTTCC
LOC_Os03g56620
Os.35191.2.S1_x_at--574--4571Chr03:32190415..32190439 (25 bp)
GCGCGCAGATGCTAACTCAGACATA
LOC_Os03g56620
Os.35191.2.S1_x_at--758--5671Chr03:32190434..32190458 (25 bp)
GACATACTGAACTACAACGGGCCAA
LOC_Os03g56620
Target Sequence 
GATATGTCTATATCTCAGCGGACTCAATTGTAAAGGGAAAAATTGAAGATCTTGGTCGCATCGATTTAGGCACTTATGCT
ATTGCTGCTGTTGAAGATTGTACCAAGCGCATTGGTGACTATGTTAGTATAGATGTTCTGAATGCCGTTCAGAAAACAGC
TCCGAAAAATTTGGTGTATACCGAACCTTATGACAAGGATGCATGCTTACTTGATTTTGATGTGCTTGTGGTGGAGCCAC
GCAAACTACGGAAGGACCTTATTGATTCTATCATGGTGTGGTTCAGGGCTTTCAGTCTAGCCAATCCAAGGGATCAAATT
AGGTTGGCAATAACATTGGCCTTGTATGACAATTATCTGAAGCTCCCTTCCAATTGGAAGCGCGCAGATGCTAACTCAGA
CATACTGAACTACAACGGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35191.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis