Browse Element(s) Details


Os.35323.1.S1_at

Description gb:AK068014.1
DB_XREF= gi:32978032
TID=Os.35323.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130K04, full insert sequence.
FL= gb:AK068014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1915011/11expressed protein
LOC_Os11g034101/11secondary cell wall-related glycosyltransferase family 47, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19136Os.27681.1.S1_a_at1/119+11416019..11422569hypothetical protein
LOC_Os09g19140NANA9+11426219..11435372Protein kinase domain containing protein
LOC_Os09g19150Os.35323.1.S1_at11/119+11440935..11443539expressed protein
LOC_Os09g19160Os.49805.1.S1_at8/119+11448826..11457901Protein kinase domain containing protein, expressed
LOC_Os09g19170OsAffx.17774.1.S1_at10/119+11458370..11459794expressed protein
LOC_Os09g19180OsAffx.6328.1.S1_at11/119+11464578..11466183Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35323.1.S1_at--830--6471Chr09:11441470..11441494 (25 bp)
GATACACATTGGAGATCTCACTATA
LOC_Os09g19150
Os.35323.1.S1_at--1004--2771Chr09:11441271..11441294 (24 bp)
AAGATGACTTAAACATAACTTTGCA
LOC_Os09g19150
Os.35323.1.S1_at--969--1451Chr09:11441144..11441168 (25 bp)
AGAAGTCACCTCTTTTTGTATGAAG
LOC_Os09g19150
Os.35323.1.S1_at--937--3691Chr09:11441091..11441115 (25 bp)
CTAGATACAAGCAGTGGCGGACCCA
LOC_Os09g19150
Os.35323.1.S1_at--260--7552Chr11:1289841..1290011 (25 bp)
GTGGCGGACCCAGCATAAAAATTTA
LOC_Os11g03410
Os.35323.1.S1_at--510--2255Chr06:7110331..7110355 (25 bp)
AAATTTAGCTATGGCGGATCATCAC
NONE
Os.35323.1.S1_at--289--1573Chr06:7110337..7110361 (25 bp)
AGCTATGGCGGATCATCACACCAGA
NONE
Os.35323.1.S1_at--214--8352Chr06:7110343..7110367 (25 bp)
GGCGGATCATCACACCAGAACGAAT
NONE
Os.35323.1.S1_at--506--6953Chr06:7110382..7110406 (25 bp)
GTAGCATTTTATTATACACAAACTA
NONE
Os.35323.1.S1_at--375--3272Chr09:11440991..11441015 (25 bp)
CAAACTATAATATGTTCGCACTTAT
LOC_Os09g19150
Os.35323.1.S1_at--471--6713Chr08:10470916..10470939 (24 bp)
GTTCGCACTTATTAGAATATATGCT
NONE
Target Sequence 
GATACACATTGGAGATCTCACTATAAAACAGTGCAACATATTCTTATTTTGTATCGCTCAATCCGGAAGGTCCTATTACA
AGTTGGAAAAGATGACTTAAACATAACTTTGCAAAGGAGGGAGCAAGATATTGTGAATGCGGTTGAGCTCATTATTTTGA
CAAAGATGCAATTGGAGATGTTGCGGCAAGACGATGGGTGGGAGAATTTTTAAAAAGAAGTCACCTCTTTTTGTATGAAG
AACGAAGTCAAAGTTCCTCATATGGATGCTAGATACAAGCAGTGGCGGACCCAGCATAAAAATTTAGCTATGGCGGATCA
TCACACCAGAACGAATATTTTAAAAATAAAGTAGCATTTTATTATACACAAACTATAATATGTTCGCACTTATTAGAATA
TATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis