Browse Element(s) Details


Os.49805.1.S1_at

Description gb:AK111655.1
DB_XREF= gi:37988318
TID=Os.49805.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151C10, full insert sequence.
FL= gb:AK111655.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g191608/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19140NANA9+11426219..11435372Protein kinase domain containing protein
LOC_Os09g19150Os.35323.1.S1_at11/119+11440935..11443539expressed protein
LOC_Os09g19160Os.49805.1.S1_at8/119+11448826..11457901Protein kinase domain containing protein, expressed
LOC_Os09g19170OsAffx.17774.1.S1_at10/119+11458370..11459794expressed protein
LOC_Os09g19180OsAffx.6328.1.S1_at11/119+11464578..11466183Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19190Os.46785.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190Os.14771.1.S1_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.5.S1_x_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.442.1.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.30226.2.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19200OsAffx.29920.1.S1_at11/119+11478882..11479139hypothetical protein
LOC_Os09g19210OsAffx.17776.1.S1_at11/119+11479882..11480202hypothetical protein
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49805.1.S1_at--125--3071Chr09:11457592..11457616 (25 bp)
AATCATATCAACCACCGTGCACATT
LOC_Os09g19160
Os.49805.1.S1_at--438--6831Chr09:11457638..11457662 (25 bp)
GTTTCTATGGGCAATATCGAGGCAA
LOC_Os09g19160
Os.49805.1.S1_at--59--6171Chr09:11457656..11457680 (25 bp)
GAGGCAATTGTTGACCCACGATTTG
LOC_Os09g19160
Os.49805.1.S1_at--902--8371Chr09:11457683..11457707 (25 bp)
GGCGAGTACGATACCAATTCAGTCT
LOC_Os09g19160
Os.49805.1.S1_at--286--5111Chr09:11457725..11457749 (25 bp)
GCACTGTTGTGCACCAAGGAAGCAT
LOC_Os09g19160
Os.49805.1.S1_at--704--2711Chr09:11457744..11457768 (25 bp)
AAGCATCTCATGAAAGGCCAACAAT
LOC_Os09g19160
Os.49805.1.S1_at--834--2431Chr09:11457810..11457834 (25 bp)
AAAAGGCTCGTGCAAGTGGTAGCAT
LOC_Os09g19160
Os.49805.1.S1_at--405--371Chr09:11457871..11457895 (25 bp)
ATCAATTAACTCACTGCTGTCAGCA
LOC_Os09g19160
Os.49805.1.S1_at--922--8771Chr09:11457905..11457929 (25 bp)
TGTTTGCGAGCATATTCCAGTCAGT
NONE
Os.49805.1.S1_at--440--10811Chr09:11457988..11458012 (25 bp)
TTGTGCCCTCTGGATTTGCAACTAA
NONE
Os.49805.1.S1_at--596--3591Chr09:11458046..11458070 (25 bp)
CATTACATGTGTTCCTTATCCTATT
NONE
Target Sequence 
AATCATATCAACCACCGTGCACATTGTGCAGCGTGTAAAGGAGAAGGTTTCTATGGGCAATATCGAGGCAATTGTTGACC
CACGATTTGGTGGCGAGTACGATACCAATTCAGTCTGGAAGGTTGTGGACATAGCACTGTTGTGCACCAAGGAAGCATCT
CATGAAAGGCCAACAATGAGTACAGTGGTGGCAGAGCTAAAGGTTGCATTAGCATTGGAAAAGGCTCGTGCAAGTGGTAG
CATTAGTGACATTAGTCAAGGAGGTGCCAATTTCGAGCTATCAATTAACTCACTGCTGTCAGCAAGATAAGAGTGTTTGC
GAGCATATTCCAGTCAGTGTTAAAACCTCCTTATTTATAAGTGTAATAACCATCAATAAGCACGCATGGAGTTGCGTTGT
GCCCTCTGGATTTGCAACTAAAATTGCTTCATGAGGGATGTATCAGAGACATAACATTACATGTGTTCCTTATCCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis