Browse Element(s) Details


OsAffx.29920.1.S1_at

Description tigr:9637.m01614
TID=OsAffx.29920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1920011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19160Os.49805.1.S1_at8/119+11448826..11457901Protein kinase domain containing protein, expressed
LOC_Os09g19170OsAffx.17774.1.S1_at10/119+11458370..11459794expressed protein
LOC_Os09g19180OsAffx.6328.1.S1_at11/119+11464578..11466183Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19190Os.46785.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190Os.14771.1.S1_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.5.S1_x_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.442.1.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.30226.2.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19200OsAffx.29920.1.S1_at11/119+11478882..11479139hypothetical protein
LOC_Os09g19210OsAffx.17776.1.S1_at11/119+11479882..11480202hypothetical protein
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29920.1.S1_at--859--1511Chr09:11478913..11478937 (25 bp)
AGCAGCTGGGTGCACCGGCTGAGGG
LOC_Os09g19200
OsAffx.29920.1.S1_at--908--7591Chr09:11478936..11478960 (25 bp)
GGGCAGATCTCCATGAGCTCCGACG
LOC_Os09g19200
OsAffx.29920.1.S1_at--702--6411Chr09:11478941..11478965 (25 bp)
GATCTCCATGAGCTCCGACGAGCCA
LOC_Os09g19200
OsAffx.29920.1.S1_at--995--5771Chr09:11478957..11478981 (25 bp)
GACGAGCCACTGAACGATGAAGACG
LOC_Os09g19200
OsAffx.29920.1.S1_at--1159--5851Chr09:11478960..11478984 (25 bp)
GAGCCACTGAACGATGAAGACGAGG
LOC_Os09g19200
OsAffx.29920.1.S1_at--977--5711Chr09:11479011..11479035 (25 bp)
GACGAAAAAGACACGGCGAAGCGTA
LOC_Os09g19200
OsAffx.29920.1.S1_at--888--4591Chr09:11479026..11479050 (25 bp)
GCGAAGCGTAGTGGGCGCGGGCAGC
LOC_Os09g19200
OsAffx.29920.1.S1_at--185--10271Chr09:11479056..11479080 (25 bp)
TTTGCGGGTGTTGACAGTCACGGAT
LOC_Os09g19200
OsAffx.29920.1.S1_at--418--4671Chr09:11479059..11479083 (25 bp)
GCGGGTGTTGACAGTCACGGATCAA
LOC_Os09g19200
OsAffx.29920.1.S1_at--788--10751Chr09:11479066..11479090 (25 bp)
TTGACAGTCACGGATCAACCGTCGG
LOC_Os09g19200
OsAffx.29920.1.S1_at--306--7091Chr09:11479072..11479096 (25 bp)
GTCACGGATCAACCGTCGGCGACGA
LOC_Os09g19200
Target Sequence 
AGCAGCTGGGTGCACCGGCTGAGGGGCAGATCTCCATGAGCTCCGACGAGCCACTGAACGATGAAGACGAGGACAAGCGA
GGTGGGAGCGTAGAAGAGGACGAAAAAGACACGGCGAAGCGTAGTGGGCGCGGGCAGCAGGGGTTTGCGGGTGTTGACAG
TCACGGATCAACCGTCGGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis