Browse Element(s) Details


OsAffx.17774.1.S1_at

Description tigr:9637.m01610
TID=OsAffx.17774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1917010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19140NANA9+11426219..11435372Protein kinase domain containing protein
LOC_Os09g19150Os.35323.1.S1_at11/119+11440935..11443539expressed protein
LOC_Os09g19160Os.49805.1.S1_at8/119+11448826..11457901Protein kinase domain containing protein, expressed
LOC_Os09g19170OsAffx.17774.1.S1_at10/119+11458370..11459794expressed protein
LOC_Os09g19180OsAffx.6328.1.S1_at11/119+11464578..11466183Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19190Os.46785.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190Os.14771.1.S1_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.5.S1_x_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.442.1.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.30226.2.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19200OsAffx.29920.1.S1_at11/119+11478882..11479139hypothetical protein
LOC_Os09g19210OsAffx.17776.1.S1_at11/119+11479882..11480202hypothetical protein
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17774.1.S1_at--479--5931Chr09:11459739..11459763 (25 bp)
GAGCAGCGGCCCAAGTAGTGACGAT
LOC_Os09g19170
OsAffx.17774.1.S1_at--978--8071Chr09:11459595..11459619 (25 bp)
GGACCACTTAGAACTAGCCTACATA
LOC_Os09g19170
OsAffx.17774.1.S1_at--773--9631Chr09:11459569..11459593 (25 bp)
TCAGTGAAGCGAAGGCCTTTAGGCC
LOC_Os09g19170
OsAffx.17774.1.S1_at--16--4431Chr09:11459555..11459579 (25 bp)
GCCTTTAGGCCATCTACAATGGGTA
LOC_Os09g19170
OsAffx.17774.1.S1_at--1041--9471Chr09:11459543..11459567 (25 bp)
TCTACAATGGGTACCCTTGGGTCGT
LOC_Os09g19170
OsAffx.17774.1.S1_at--558--8031Chr09:11459350..11459374 (25 bp)
GGAGTATCTCCACCGGGTTGCTTCA
LOC_Os09g19170
OsAffx.17774.1.S1_at--642--1271Chr09:11459326..11459350 (25 bp)
AGATCTTGAGGAACCCATTCAGGGA
LOC_Os09g19170
OsAffx.17774.1.S1_at--253--1072Chr11:26516592..26516611 (20 bp)
AGGGATATCCTCCATTGCGAGCTGA
NONE
OsAffx.17774.1.S1_at--388--71Chr09:11459293..11459317 (25 bp)
ATTGCGAGCTGAGTTCTCCTACGAG
LOC_Os09g19170
OsAffx.17774.1.S1_at--345--6071Chr09:11459283..11459307 (25 bp)
GAGTTCTCCTACGAGTATTCTCAGT
LOC_Os09g19170
OsAffx.17774.1.S1_at--1087--10191NONE
TATTCTCAGTTATTGCCAGTTCGTG
NONE
Target Sequence 
GAGCAGCGGCCCAAGTAGTGACGATGCCAGAGAAGGACCACTTAGAACTAGCCTACATAGTCAGTGAAGCGAAGGCCTTT
AGGCCATCTACAATGGGTACCCTTGGGTCGTCCCCTTGCTCACATCGTCCGCCGGGCAAGAGGGAGATGCGAGGGGCGGC
GGAGTATCTCCACCGGGTTGCTTCAGATCTTGAGGAACCCATTCAGGGATATCCTCCATTGCGAGCTGAGTTCTCCTACG
AGTATTCTCAGTTATTGCCAGTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis