Browse Element(s) Details


OsAffx.25156.2.S1_x_at

Description gb:NM_193694.1
DB_XREF= gi:34914471
GEN=B1080D07.8
TID=OsAffx.25156.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1080D07.8 (B1080D07.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g191904/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g177003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g226602/11retrotransposon protein, putative, unclassified
LOC_Os12g191401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19160Os.49805.1.S1_at8/119+11448826..11457901Protein kinase domain containing protein, expressed
LOC_Os09g19170OsAffx.17774.1.S1_at10/119+11458370..11459794expressed protein
LOC_Os09g19180OsAffx.6328.1.S1_at11/119+11464578..11466183Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19190Os.46785.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190Os.14771.1.S1_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.5.S1_x_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.442.1.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.30226.2.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19200OsAffx.29920.1.S1_at11/119+11478882..11479139hypothetical protein
LOC_Os09g19210OsAffx.17776.1.S1_at11/119+11479882..11480202hypothetical protein
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25156.2.S1_x_at--359--814Chr01:17639650..17639674 (25 bp)
ATGGTTCTATATCAGCAACCCCTAC
NONE
OsAffx.25156.2.S1_x_at--415--3731Chr01:17639671..17639695 (25 bp)
CTACTCCACCGAAAATACTCAGGCA
NONE
OsAffx.25156.2.S1_x_at--704--3091Chr01:17639684..17639708 (25 bp)
AATACTCAGGCAAACTGGCTGCTTT
NONE
OsAffx.25156.2.S1_x_at--972--8111Chr01:17639760..17639784 (25 bp)
GGACTCTTGAGTCCCGACTCATTCT
NONE
OsAffx.25156.2.S1_x_at--901--3794Chr01:17639857..17640043 (25 bp)
CTCGCCCGTGTTGCGGACTTTGGAA
NONE
OsAffx.25156.2.S1_x_at--1008--4093Chr01:17640063..17640087 (25 bp)
CGAAGATGATCGGAGCTCTAACCAC
NONE
OsAffx.25156.2.S1_x_at--1057--713Chr01:17640117..17640141 (25 bp)
ATGTTGACGGCCGAGTGAACCGTGT
NONE
OsAffx.25156.2.S1_x_at--1088--7351Chr01:17640131..17640155 (25 bp)
GTGAACCGTGTCTATACCGGCAAAT
NONE
OsAffx.25156.2.S1_x_at--993--8711Chr01:17640207..17640231 (25 bp)
TGAAAAAACGCAAACGTGCGGTCGC
NONE
OsAffx.25156.2.S1_x_at--581--991NONE
AGGATGGCTCTCATGGGCTGTTCGA
NONE
OsAffx.25156.2.S1_x_at--455--9511Chr01:17640335..17640824 (25 bp)
TCTCATGGGCTGTTCGACGGGTTCG
NONE
Target Sequence 
ATGGTTCTATATCAGCAACCCCTACTCCACCGAAAATACTCAGGCAAACTGGCTGCTTTTTGAGCGTTCTGCCGTCTGCA
TCAACGCGAAGCCAAACGTGGAGATCGACGGGACTCTTGAGTCCCGACTCATTCTCCTTCGCAAGGTTGCCCGGCGGCTG
AGCACCCGGGATCTTTGCGAGGAGTTTTGTCTCCTTCGGATTTCCCTCTCGCCCGTGTTGCGGACTTTGGAAGACGCTGA
GATTGAGGCGTCGAAGATGATCGGAGCTCTAACCACAGCCGAGTTCGCCCGCTTGCTCCAGCGCCATGTTGACGGCCGAG
TGAACCGTGTCTATACCGGCAAATTGCCAAGCCGATCGAACCCCTCTCGGGCCGGCGATGACGAGGCTGGCACTTTGAAA
AAACGCAAACGTGCGGTCGCGAAAGGCGGCCAAGTCCGAACTCGCCGTAGCGCGAAGGCCGCCGTCGAAAGTGATGGGGA
GGAGGAAGAGGAGGATGCGGAGGCCGGTTCTGAGGAGGATGGCTCTCATGGGCTGTTCGACGGGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25156.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis