Browse Element(s) Details


OsAffx.17776.1.S1_at

Description tigr:9637.m01615
TID=OsAffx.17776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1921011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19160Os.49805.1.S1_at8/119+11448826..11457901Protein kinase domain containing protein, expressed
LOC_Os09g19170OsAffx.17774.1.S1_at10/119+11458370..11459794expressed protein
LOC_Os09g19180OsAffx.6328.1.S1_at11/119+11464578..11466183Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g19190Os.46785.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_x_at4/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190Os.14771.1.S1_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.5.S1_x_at2/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.25156.2.S1_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.442.1.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19190OsAffx.30226.2.S1_x_at1/119+11469105..11476677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g19200OsAffx.29920.1.S1_at11/119+11478882..11479139hypothetical protein
LOC_Os09g19210OsAffx.17776.1.S1_at11/119+11479882..11480202hypothetical protein
LOC_Os09g19229Os.27174.1.A1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.29921.1.S1_at11/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_at3/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229Os.39431.1.S1_x_at2/119+11482607..11505481Protein kinase domain containing protein, expressed
LOC_Os09g19229OsAffx.21209.1.S1_at1/119+11482607..11505481Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17776.1.S1_at--805--1871Chr09:11479912..11479936 (25 bp)
ACGAGGCTGACACCGTTCGCCGCGC
LOC_Os09g19210
OsAffx.17776.1.S1_at--338--3951Chr09:11479989..11480013 (25 bp)
CGTGTGGAACCCGAATGACCGGTTG
LOC_Os09g19210
OsAffx.17776.1.S1_at--801--8631Chr09:11479991..11480015 (25 bp)
TGTGGAACCCGAATGACCGGTTGAT
LOC_Os09g19210
OsAffx.17776.1.S1_at--314--8171Chr09:11479994..11480018 (25 bp)
GGAACCCGAATGACCGGTTGATGAC
LOC_Os09g19210
OsAffx.17776.1.S1_at--48--4111Chr09:11480000..11480024 (25 bp)
CGAATGACCGGTTGATGACGCCGAT
LOC_Os09g19210
OsAffx.17776.1.S1_at--437--691Chr09:11480003..11480027 (25 bp)
ATGACCGGTTGATGACGCCGATGTC
LOC_Os09g19210
OsAffx.17776.1.S1_at--286--691Chr09:11480014..11480038 (25 bp)
ATGACGCCGATGTCGTTGTCCGCCG
LOC_Os09g19210
OsAffx.17776.1.S1_at--1104--4031Chr09:11480021..11480045 (25 bp)
CGATGTCGTTGTCCGCCGTCTTCGG
LOC_Os09g19210
OsAffx.17776.1.S1_at--939--10791Chr09:11480029..11480053 (25 bp)
TTGTCCGCCGTCTTCGGGATCGCCG
LOC_Os09g19210
OsAffx.17776.1.S1_at--552--1311Chr09:11480132..11480156 (25 bp)
AGAGGAAACCGGGATGCACACGAGA
LOC_Os09g19210
OsAffx.17776.1.S1_at--50--1791Chr09:11480139..11480163 (25 bp)
ACCGGGATGCACACGAGAGGAGGAA
LOC_Os09g19210
Target Sequence 
ACGAGGCTGACACCGTTCGCCGCGCTCTCGACCTCCACGTGCCCGGCGGCGATCGCCTGCTGCGCCGCCTCCACCGCCGT
GTGGAACCCGAATGACCGGTTGATGACGCCGATGTCGTTGTCCGCCGTCTTCGGGATCGCCGCCACCGCCGAACCTCGTC
ACGCGCCGCGCATCGTGCCATCCTCGCCGACGGATTGGTGGTTGGCGTCGTCGGCGGAGGAGAGGAAACCGGGATGCACA
CGAGAGGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis