Browse Element(s) Details


Os.35337.1.S1_at

Description gb:AK067944.1
DB_XREF= gi:32977962
TID=Os.35337.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123M24, full insert sequence.
FL= gb:AK067944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g049509/11Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g053105/11Splicing factor 3B subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04940Os.45173.1.S1_x_at4/112+2295764..2302799retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g04940OsAffx.20877.1.S1_at1/112+2295764..2302799retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g04950Os.35337.1.S1_at9/112+2318089..2323335Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g04950Os.50814.1.S1_s_at7/112+2318089..2323335Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g04950OsAffx.2514.1.S1_s_at7/112+2318089..2323335Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g04960Os.23849.1.A1_at11/112+2325412..2328080expressed protein
LOC_Os02g04960Os.55376.1.S1_at1/112+2325412..2328080expressed protein
LOC_Os02g04970OsAffx.11895.1.S1_at11/112+2331774..2345463expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35337.1.S1_at--1078--2531Chr02:2319588..2319612 (25 bp)
AACTCAACTATATATTGCTGCACAA
LOC_Os02g04950
Os.35337.1.S1_at--808--8371Chr02:2319498..2319519 (22 bp)
GGCGATGTTTGTCTGTTCAATGGTA
LOC_Os02g04950
Os.35337.1.S1_at--582--9471NONE
TCTGTTCAATGGTATTTTGACCCGG
NONE
Os.35337.1.S1_at--1099--712Chr02:2599421..2599445 (25 bp)
ATGATATCTGTCCTGCATGTCACAC
NONE
Os.35337.1.S1_at--615--9052Chr02:2599408..2599432 (25 bp)
TGCATGTCACACTTTGTTGCCGTTG
NONE
Os.35337.1.S1_at--70--351NONE
ATAAAGCTACTATCGAGGTTGTGAA
NONE
Os.35337.1.S1_at--517--10213Chr02:2551049..2551073 (25 bp)
TATTACTACCCTGCTCTGAGTTGAT
LOC_Os02g05310
Os.35337.1.S1_at--956--6392Chr02:2551095..2551119 (25 bp)
GATCGTATAGTGTCTGTTTTCTTCC
LOC_Os02g05310
Os.35337.1.S1_at--449--10192Chr02:2551100..2551124 (25 bp)
TATAGTGTCTGTTTTCTTCCCGGAC
LOC_Os02g05310
Os.35337.1.S1_at--109--9552Chr02:2551114..2551138 (25 bp)
TCTTCCCGGACTGTTAGTTGTTACT
LOC_Os02g05310
Os.35337.1.S1_at--268--8772Chr02:2551157..2551181 (25 bp)
TGTATTGCGTATGTTGTGGTTTGTG
LOC_Os02g05310
Target Sequence 
AACTCAACTATATATTGCTGCACAAGATGCGCTTGTTGCTGCTTATCCTGCACTGGATGACGATGGGGATAATATCTACA
GCCGTCCAGAGCTGGCGATGTTTGTCTGTTCAATGGTATTTTGACCCGGTTTGCTGAGGAGTTCCCTTAGATTAAAAGAT
CCCAAGGAGATGATATCTGTCCTGCATGTCACACTTTGTTGCCGTTGCATGATCCTCTCCGCTCTGAAGAGAAAATGATC
AACATAGTATTACTGCTGTCCCAATAACTGTATTATTAGCAAAAAAATGTTATAAAGCTACTATCGAGGTTGTGAACTTG
TCTTATTATTAGAGTCTGTATTAGTAATGTTATTACTATGCCTGGAACGTGGTATTAGTATTACTACCCTGCTCTGAGTT
GATGGATCAATGGATGGATGGTTAGATCGTATAGTGTCTGTTTTCTTCCCGGACTGTTAGTTGTTACTTTAGAAAATGTT
TTAAATTGTATTGCGTATGTTGTGGTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis