Browse Element(s) Details


Os.50814.1.S1_s_at

Description gb:AK058747.1
DB_XREF= gi:32968765
TID=Os.50814.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H04, full insert sequence.
FL= gb:AK058747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0531011/11Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g049507/11Splicing factor 3B subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05250NANA2+2521222..2522480expressed protein
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed
LOC_Os02g05340Os.14890.1.S1_at11/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05340Os.14890.1.S2_at10/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05350OsAffx.2512.1.S1_x_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05350Os.11895.1.S1_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05360Os.11895.1.S1_at11/112+2575659..2577062expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50814.1.S1_s_at--872--9072Chr02:2549764..2549788 (25 bp)
TGCTTATCCTGCACTGGATGACGAT
LOC_Os02g05310
Os.50814.1.S1_s_at--919--6452Chr02:2549792..2549816 (25 bp)
GATAATATCTACAGCCGTCCAGAGC
LOC_Os02g05310
Os.50814.1.S1_s_at--513--5892Chr02:2549813..2549837 (25 bp)
GAGCTGGCGATGTTTGTCTGATCAA
LOC_Os02g05310
Os.50814.1.S1_s_at--168--9892Chr02:2550489..2550513 (25 bp)
TACATTTCCATGTACCGTCATCCAA
LOC_Os02g05310
Os.50814.1.S1_s_at--476--193Chr02:2550632..2550656 (25 bp)
ATTTGCAGGCTTGTTGCTTCTGAAG
LOC_Os02g05310
Os.50814.1.S1_s_at--989--2993Chr02:2550706..2550730 (25 bp)
AATGATAAATTGCTACCTGTTCTGA
LOC_Os02g05310
Os.50814.1.S1_s_at--826--1752Chr02:2550720..2550744 (25 bp)
ACCTGTTCTGATGTACTGACGTTTT
LOC_Os02g05310
Os.50814.1.S1_s_at--1143--10393Chr02:2550770..2550794 (25 bp)
TTTTGACCCGGTTTGCTGAGGAGTT
LOC_Os02g05310
Os.50814.1.S1_s_at--258--6511Chr02:2550822..2550846 (25 bp)
GATATCTGTCCTGAATGTTTACTTT
LOC_Os02g05310
Os.50814.1.S1_s_at--760--6373Chr02:2550860..2550884 (25 bp)
GATCCCCTCCGCTCTGAAGAGAAAA
LOC_Os02g05310
Os.50814.1.S1_s_at--347--6873Chr02:2550896..2550920 (25 bp)
GTATTACTGCTGTCCCAATAACTGT
LOC_Os02g05310
Target Sequence 
TGCTTATCCTGCACTGGATGACGATGGGGATAATATCTACAGCCGTCCAGAGCTGGCGATGTTTGTCTGATCAATGCAGG
ATGTACATTTCCATGTACCGTCATCCAATATATGCGTGTGAACTGTGAAGCTTGAACTCGGTGGTATTTGAGTTAGCTGA
TATTCAATTTATGGTGTTTACTTGTGATGGATGCATTTTCATTGAAGTTGCATTTCTTTTTTCTTTATTTGCAGGCTTGT
TGCTTCTGAAGGGGGTGCAATGTTTAGGATATATTTCCCCCTGGTTTACTTGTGTAATGTAATGATAAATTGCTACCTGT
TCTGATGTACTGACGTTTTTGTTACTGGTTTTGTGTTCAGGGTATTTTGACCCGGTTTGCTGAGGAGTTCCCTTAGATTA
AAGATCCCAAGGAGATGATATCTGTCCTGAATGTTTACTTTGTTGCCGTTGCATGATCCCCTCCGCTCTGAAGAGAAAAT
GATCAACATAGTATTACTGCTGTCCCAATAACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50814.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis