Browse Element(s) Details


Os.26890.1.A1_x_at

Description gb:AK067901.1
DB_XREF= gi:32977919
TID=Os.26890.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013125B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013125B21, full insert sequence.
FL= gb:AK067901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0532010/11phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g054004/11phosphatidate cytidylyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed
LOC_Os02g05340Os.14890.1.S1_at11/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05340Os.14890.1.S2_at10/112+2563645..2571145Proteasome/cyclosome repeat family protein, expressed
LOC_Os02g05350OsAffx.2512.1.S1_x_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05350Os.11895.1.S1_at1/112+2572267..2572785hypothetical protein
LOC_Os02g05360Os.11895.1.S1_at11/112+2575659..2577062expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0004605molecular_functionphosphatidate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26890.1.A1_x_at--1041--2273Chr02:2555738..2555762 (25 bp)
AAATCCTCTTATTGGTCGCATTCTC
LOC_Os02g05320
Os.26890.1.A1_x_at--261--4952Chr02:2555755..2555779 (25 bp)
GCATTCTCTGTATTCCTGGACCGAG
LOC_Os02g05320
Os.26890.1.A1_x_at--625--7352Chr02:2555851..2555875 (25 bp)
GTGAATCCTTCAGTAGAGAGCATCT
LOC_Os02g05320
Os.26890.1.A1_x_at--357--293Chr02:2555884..2555908 (25 bp)
ATAGACTTCTGAGCCTATCTGGAGG
LOC_Os02g05320
Os.26890.1.A1_x_at--151--1031Chr02:2555926..2555950 (25 bp)
AGGTATGTTGTCTTTCAGAACCAGA
LOC_Os02g05320
Os.26890.1.A1_x_at--191--2531Chr02:2555950..2555974 (25 bp)
AACTTCTTCTGCAGGTGGTGAGACC
LOC_Os02g05320
Os.26890.1.A1_x_at--231--7852Chr02:2556087..2556111 (25 bp)
GGTACCTTATTTCCATGGACATGCG
LOC_Os02g05320
Os.26890.1.A1_x_at--1084--4832Chr02:2556132..2556156 (25 bp)
GCTAATCTCCTGTAAGTTTTGCGTC
LOC_Os02g05320
Os.26890.1.A1_x_at--324--6813Chr02:2556147..2556171 (25 bp)
GTTTTGCGTCATCACTGTACGGAGT
LOC_Os02g05320
Os.26890.1.A1_x_at--643--6452Chr02:2556176..2556200 (25 bp)
GATCACTACTCAGATTGCAACCGCG
LOC_Os02g05320
Os.26890.1.A1_x_at--591--1253Chr02:2556283..2556307 (25 bp)
AGATTGGCAGGTTTGCGATGTTTGA
NONE
Target Sequence 
AAATCCTCTTATTGGTCGCATTCTCTGTATTCCTGGACCGAGAAATTGTGTCCATTACTAAAAAGTTGAGTTTAGGTTTA
GGAAATAAAGATGAAAATATGAAAGGTTGTTTAGTGAATCCTTCAGTAGAGAGCATCTTTGGTATGATAGACTTCTGAGC
CTATCTGGAGGCATCAATGTATCATGGAAGGTATGTTGTCTTTCAGAACCAGAACTTCTTCTGCAGGTGGTGAGACCTAT
TTCACCCCACAACTCCACAAGCAGTTGGGCAAGAATAGCAAGCTGAGAGTAAAGCCATATGCTGCAAGGAGCCTGAAATA
CGGAGACTTGGTTCAGAATTAATGTATATGGTACCTTATTTCCATGGACATGCGAAGTGTAATTAGTTGTAGTAGCTAAT
CTCCTGTAAGTTTTGCGTCATCACTGTACGGAGTAAAAGATCACTACTCAGATTGCAACCGCGCATTGATGTAAATTTTG
TTCTTGACCTGAGAAAAAATGAAATCGAAGTAAGCAANGCTGCAAATTAATGTNCTCCTATTATGAGATTGGCAGGTTTG
CGATGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26890.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis