Browse Element(s) Details


Os.15499.1.S1_x_at

Description gb:BM038469
DB_XREF= gi:16754090
DB_XREF=V002B10
CLONE=V002B10
TID=Os.15499.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15499 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g052601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05220NANA2+2497920..2503909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05230OsAffx.22461.3.S1_x_at8/112+2506007..2509046retrotransposon protein, putative, unclassified, expressed
LOC_Os02g05230OsAffx.22461.2.S1_x_at6/112+2506007..2509046retrotransposon protein, putative, unclassified, expressed
LOC_Os02g05240OsAffx.24108.1.S1_at11/112+2511112..2511576hypothetical protein
LOC_Os02g05244Os.54263.1.S1_at11/112+2516858..2519230expressed protein
LOC_Os02g05244Os.54263.2.S1_x_at11/112+2516858..2519230expressed protein
LOC_Os02g05250NANA2+2521222..2522480expressed protein
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein
LOC_Os02g05310Os.50814.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.50814.2.S1_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310OsAffx.2514.1.S1_s_at11/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05310Os.35337.1.S1_at5/112+2545982..2551238Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05320Os.26890.1.A1_x_at10/112+2551634..2556276phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g05330Os.458.1.S1_at11/112+2557639..2561011Eukaryotic initiation factor 4A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15499.1.S1_x_at--368--2471NONE
AACACCCGAGTACAGTGGAGCCAGT
NONE
Os.15499.1.S1_x_at--158--1131NONE
AGTGCAGCAGTCAGCCAGCCACACA
NONE
Os.15499.1.S1_x_at--650--2191NONE
ACACAGCCAGGCAGGGCTCAGCAGG
NONE
Os.15499.1.S1_x_at--297--3471NONE
CAGGGCTCAGCAGGCAGAGGGCGGA
NONE
Os.15499.1.S1_x_at--669--7531NONE
GTGGCAGCAGCAGGGATCGAGGAGG
NONE
Os.15499.1.S1_x_at--949--3911NONE
CGGAACATCCCGAGTTCGTGCCCAT
NONE
Os.15499.1.S1_x_at--254--10273Chr04:3649586..3649618 (25 bp)
TTTGTTGTTGCCACGTGTGCAGTGT
NONE
Os.15499.1.S1_x_at--162--10791NONE
TTGTTGCCACGTGTGCAGTGTGTAT
NONE
Os.15499.1.S1_x_at--769--10691NONE
TTGCCACGTGTGCAGTGTGTATGTT
NONE
Os.15499.1.S1_x_at--736--5431NONE
GAACCTTAATGATAGTATTCACAGT
NONE
Os.15499.1.S1_x_at--928--6491NONE
GATAGTATTCACAGTGGAATCATAT
NONE
Target Sequence 
AACACCCGAGTACAGTGGAGCCAGTGTGGGGGCCAGGCAGTGCAGCAGTCAGCCAGCCACACAGCCAGGCAGGGCTCAGC
AGGCAGAGGGCGGAGGTGGCAGCAGCAGGGATCGAGGAGGTGATGCCGGCGAGAGGACGGCGAGTACCGGAGGAACCCCA
GCGTGGATGGAGAAGGCCAGGGCGGCGACCGGGAGGCGGGAGCTCGGACCGGAACATCCCGAGTTCGTGCCCATGTACGG
ATGATATGATTTTGTTGTTGCCACGTGTGCAGTGTGTATGTTCGCACGTGCGAGAACCTTAATGATAGTATTCACAGTGG
AATCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15499.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis