Browse Element(s) Details


OsAffx.24108.1.S1_at

Description tigr:9630.m00442
TID=OsAffx.24108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0524011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05200NANA2+2486803..2489659expressed protein
LOC_Os02g05210OsAffx.17842.1.S1_at2/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.15463.1.S1_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.25548.1.S1_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.31892.5.S1_x_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.31892.5.S1_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05220NANA2+2497920..2503909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05230OsAffx.22461.3.S1_x_at8/112+2506007..2509046retrotransposon protein, putative, unclassified, expressed
LOC_Os02g05230OsAffx.22461.2.S1_x_at6/112+2506007..2509046retrotransposon protein, putative, unclassified, expressed
LOC_Os02g05240OsAffx.24108.1.S1_at11/112+2511112..2511576hypothetical protein
LOC_Os02g05244Os.54263.1.S1_at11/112+2516858..2519230expressed protein
LOC_Os02g05244Os.54263.2.S1_x_at11/112+2516858..2519230expressed protein
LOC_Os02g05250NANA2+2521222..2522480expressed protein
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24108.1.S1_at--404--9351Chr02:2511158..2511182 (25 bp)
TCGACGGCGGAACCAACCGGATCGT
LOC_Os02g05240
OsAffx.24108.1.S1_at--433--7331Chr02:2511166..2511190 (25 bp)
GGAACCAACCGGATCGTCTCGGACT
LOC_Os02g05240
OsAffx.24108.1.S1_at--513--7971Chr02:2511176..2511200 (25 bp)
GGATCGTCTCGGACTCAGCAACAAG
LOC_Os02g05240
OsAffx.24108.1.S1_at--93--7171Chr02:2511181..2511205 (25 bp)
GTCTCGGACTCAGCAACAAGCATGA
LOC_Os02g05240
OsAffx.24108.1.S1_at--1038--2711Chr02:2511198..2511222 (25 bp)
AAGCATGAGGAACTGGCGGCGCGGT
LOC_Os02g05240
OsAffx.24108.1.S1_at--894--7511Chr02:2511242..2511266 (25 bp)
GTGGATGGCAAGATACAGGCGAAAC
LOC_Os02g05240
OsAffx.24108.1.S1_at--1028--8591Chr02:2511295..2511319 (25 bp)
TGGTCGCAGCGGATGGGTGGAGAAA
LOC_Os02g05240
OsAffx.24108.1.S1_at--738--9131Chr02:2511407..2511431 (25 bp)
TGCGGCTTCGTTGGCCTGTCACGAG
LOC_Os02g05240
OsAffx.24108.1.S1_at--200--6171Chr02:2511436..2511460 (25 bp)
GAGGATGCGCGCGAATCGAGTAGGA
LOC_Os02g05240
OsAffx.24108.1.S1_at--215--7671Chr02:2511505..2511529 (25 bp)
GGGATTTATGCGACCGAGTCATCGC
LOC_Os02g05240
OsAffx.24108.1.S1_at--447--9151Chr02:2511513..2511537 (25 bp)
TGCGACCGAGTCATCGCGAGGCAGA
LOC_Os02g05240
Target Sequence 
TCGACGGCGGAACCAACCGGATCGTCTCGGACTCAGCAACAAGCATGAGGAACTGGCGGCGCGGTGGAGATGGCTGTAGG
AGCGGTGGATGGCAAGATACAGGCGAAACAGTGATGGGGGCGCGATCGGCAGGGCGGTGGTCGCAGCGGATGGGTGGAGA
AATCGGTGGCGGCGGGGGAAGGGACGACCTCGGGGGCAGCGGTGGACTGCAGCGGCGATGGCGGATGGGGAAGATCTCGT
CTCCGGCTGTGCGGCTTCGTTGGCCTGTCACGAGGAGGGAGGATGCGCGCGAATCGAGTAGGAGCGAGGAGGGCGGCGGG
GATTCGCGGGGAGGAGTCAGCGCGGCGGGGATTTATGCGACCGAGTCATCGCGAGGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis