Browse Element(s) Details


Os.54263.1.S1_at

Description gb:AK102901.1
DB_XREF= gi:32988110
TID=Os.54263.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113C20, full insert sequence.
FL= gb:AK102901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0524411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05210OsAffx.17842.1.S1_at2/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.15463.1.S1_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.25548.1.S1_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.31892.5.S1_x_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05210OsAffx.31892.5.S1_at1/112+2490680..2493853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05220NANA2+2497920..2503909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05230OsAffx.22461.3.S1_x_at8/112+2506007..2509046retrotransposon protein, putative, unclassified, expressed
LOC_Os02g05230OsAffx.22461.2.S1_x_at6/112+2506007..2509046retrotransposon protein, putative, unclassified, expressed
LOC_Os02g05240OsAffx.24108.1.S1_at11/112+2511112..2511576hypothetical protein
LOC_Os02g05244Os.54263.1.S1_at11/112+2516858..2519230expressed protein
LOC_Os02g05244Os.54263.2.S1_x_at11/112+2516858..2519230expressed protein
LOC_Os02g05250NANA2+2521222..2522480expressed protein
LOC_Os02g05260OsAffx.20369.1.S1_at7/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05260Os.15499.1.S1_x_at1/112+2527892..2533665retrotransposon protein, putative, unclassified
LOC_Os02g05270OsAffx.11899.1.S1_at11/112+2535305..2536173hypothetical protein
LOC_Os02g05280OsAffx.11900.1.S1_at11/112+2538168..2538668hypothetical protein
LOC_Os02g05290NANA2+2539904..2540692hypothetical protein
LOC_Os02g05300OsAffx.11902.1.S1_at11/112+2542088..2543950hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54263.1.S1_at--449--1512Chr08:14152617..14152639 (23 bp)
AGCAGCAAGCAACAACCTACAGAGG
NONE
Os.54263.1.S1_at--615--3431Chr02:2518652..2518676 (25 bp)
CAGAGGGCCGTCCATTATTTTAAAT
LOC_Os02g05244
Os.54263.1.S1_at--335--2452Chr08:14152699..14152723 (25 bp)
AAAATTTCTCTTTTCTACATCATAG
NONE
Os.54263.1.S1_at--888--6591Chr02:2518889..2518913 (25 bp)
GATTGAGATCACAACCACCAATTCG
LOC_Os02g05244
Os.54263.1.S1_at--131--4831Chr02:2518922..2518946 (25 bp)
GCTCATTGCACAGAAGTGTTCCTTA
LOC_Os02g05244
Os.54263.1.S1_at--1021--2871Chr02:2518973..2518997 (25 bp)
AAGGGAACTTTTTTCTCTGCAGGCT
LOC_Os02g05244
Os.54263.1.S1_at--1121--8191Chr02:2519008..2519032 (25 bp)
GGAAGTCTGCAAGGATACTGCTTTT
LOC_Os02g05244
Os.54263.1.S1_at--1149--9911Chr02:2519023..2519047 (25 bp)
TACTGCTTTTTTGCGGCATCAGCAA
LOC_Os02g05244
Os.54263.1.S1_at--841--2971Chr02:2519047..2519071 (25 bp)
AATGTTGATCCCTGAACCTTTGAAT
LOC_Os02g05244
Os.54263.1.S1_at--372--10191Chr02:2519127..2519151 (25 bp)
TATTTAATTTGTCAGGTCGTCTCCT
LOC_Os02g05244
Os.54263.1.S1_at--298--9491Chr02:2519165..2519189 (25 bp)
TCTCCACTCATCTTGGACTTGTTTA
LOC_Os02g05244
Target Sequence 
AGCAGCAAGCAACAACCTACAGAGGGCCGTCCATTATTTTAAATTTCATTTTTGGTAGTTAAAGGCCGTGTTTAGTTTCA
AAGTTTTTCTTCAAACTTCAAACTTTTCTATCACATCAAAACTTTTCTACACACACAAACTTTCAACTTTTCCGTCACAT
CGTTCCAATTTCAACCAAATTTCTAATTTTGGCGTGAACTAAACACAGCCAAAATTATGAAAAATGCACATAAAAATTTC
TCTTTTCTACATCATAGATTGAGATCACAACCACCAATTCGAAACAATTGCTCATTGCACAGAAGTGTTCCTTAAATTAT
GCAGTTTCAGTCAGAAACTAAAGGGAACTTTTTTCTCTGCAGGCTTTGGGAAGAAGGAAGTCTGCAAGGATACTGCTTTT
TTGCGGCATCAGCAAATGTTGATCCCTGAACCTTTGAATATGTATATTGTTGATGCAACCTTTGAATAGAACAAATGTTC
AGACTTGTTTAATTTATTTAATTTGTCAGGTCGTCTCCTGCTGCTCGTCAGCTCTCCACTCATCTTGGACTTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis